Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02843 ATGCAAGATTGTACTCTAGAAGGTTCTAAGCTTCTATTGCTAGCGAAATCACAACACGTGGCATCTCATTTTCGTTCTCTTATTCGTGCAGTGTCTACTACACTAGATGTTTTGCCTTTACACAAGGTGGAAATTTGCTACGAAGTGAAGGAGTTTGTTGAATTAGTAGCAAAACAAGCTAGAAAAGCTAAATTTGAAGTTGACCCCAGTGATGAATTTGCCACCAAGAAACTTCATTTAGTTCTGCAACAATTTGAGAGAGGAATTGAACCAAATATGAATACCATGAATGAAGTTCTAGATTATTTAAGAATGAAAAACTGGAATGATTGTGACAGAGAAATCAAATTCTTAGAAGATGAGATAAGTTTGTTAGAGAATCGTGATTGTAACGAACGTGAAGTTCCGTTGTTTTGTAGTTTGGTTGCGTTTTTAAGCTACTGCAGAGTAGTTATATTTGAATCTCTTGATAGAAATTCTTCTGATGAACTCGAAGCTCGACGCAGCACAGAGATCATAACTATAACTACTTGTTTGAATCCAGAGGATTTTCGATGTCCAATTTCGCTCGAATTAATGACAGAACCAGTAACAGTTTCAACAGGACAAACCTATGACCGTGTTTCAATTCAGAAATGGCTTAAATCAGGAAACACAACATGTCCCAAAACAGGTAGTTCTGCAGCAGCACATGCTATGCAGTTTCTTTCATGGTTTCTAACACGAAGGCTCGTGTTTGGAACTGAGAAACAGAAAAACAAAGCAGCTTATGAGATTCGTTTGTTAACAAGGTCAAGTATTTTCAATAGAGCATGTTTGATTGAAGTTGGAACTGTTCCACCATTGTTGGAACTTTTAGCTACGGAAGATAAAACGACGCAAGAGAATGCTATCTCTGCTTTGATGAAGCTTTCAAAGCATGCAACTGGGCCTGAAAATATAATAGCCCATAACGGTTTAAAGCCTGTTGTTTATGTACTGAGAAACGGGCTTAGTCTTGAAGCCCGTCAAATTGCAGCTGCTATAATATTCTATCTTTGTTCTGTGAAAGAATATAGAAAAATCATAGGTGAAAATCAAGATGTGATTCATGGTTTAGTGAAATTGGTTAAAGAAGGAACAACCTGCGGGAAGAAGAATGCAGTTGTTGCGATTTTTGGACTTCTTTTACTTCCTAGGAATCATCAACGCGTGCTTGAATCCGGTGTTGTTCATGCGCTTGTTTCTATTTTGGCTTCTTCTGATAAGGAAGAACTTGTTACTGAAGCTTTGGCTGTTCTTGCTGCACTTGCTGAGAATTTTGATGGAGCTAATGCTGTTTTTGAAGCTTCTGCATTGACTTTGATTATTGGGATGTTGAGATCTGCTACTTCGCGAGTAGGGAAGGAACATTGTGCTTCGATTTTGTTGTCGCTAAGTGTTAATGTTGGTGTGGATGTTGTAGGTGTTCTTGCTAAGGATGTTACGCTTATGCCTTTGCTTTATTCGCTTCTTACTGATGGCAATTCTCATGCTGCTAAAAAAGCACGTTTGCTTATTAAAGTTCTTCAAGATTTCAATGAAACAGCTAGTTCTCGATTGAAAGGTTCTTCAATTCTGCGTGAAATGAATGGGTTAGAACTTAGAAATTAG 1632 0.3781 MQDCTLEGSKLLLLAKSQHVASHFRSLIRAVSTTLDVLPLHKVEICYEVKEFVELVAKQARKAKFEVDPSDEFATKKLHLVLQQFERGIEPNMNTMNEVLDYLRMKNWNDCDREIKFLEDEISLLENRDCNEREVPLFCSLVAFLSYCRVVIFESLDRNSSDELEARRSTEIITITTCLNPEDFRCPISLELMTEPVTVSTGQTYDRVSIQKWLKSGNTTCPKTGSSAAAHAMQFLSWFLTRRLVFGTEKQKNKAAYEIRLLTRSSIFNRACLIEVGTVPPLLELLATEDKTTQENAISALMKLSKHATGPENIIAHNGLKPVVYVLRNGLSLEARQIAAAIIFYLCSVKEYRKIIGENQDVIHGLVKLVKEGTTCGKKNAVVAIFGLLLLPRNHQRVLESGVVHALVSILASSDKEELVTEALAVLAALAENFDGANAVFEASALTLIIGMLRSATSRVGKEHCASILLSLSVNVGVDVVGVLAKDVTLMPLLYSLLTDGNSHAAKKARLLIKVLQDFNETASSRLKGSSILREMNGLELRN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02843 543 FunFam RING-type E3 ubiquitin transferase 180 246 - -
Trre15g02843 543 Coils Coil 108 128 - -
Trre15g02843 543 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 277 319 IPR000225 GO:0005515
Trre15g02843 543 Pfam Armadillo/beta-catenin-like repeat 269 301 IPR000225 GO:0005515
Trre15g02843 543 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 231 IPR013083 -
Trre15g02843 543 Pfam U-box domain 181 229 IPR003613 GO:0004842|GO:0016567
Trre15g02843 543 SMART Ubox_2 183 238 IPR003613 GO:0004842|GO:0016567
Trre15g02843 543 FunFam RING-type E3 ubiquitin transferase 215 527 - -
Trre15g02843 543 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 402 445 IPR000225 GO:0005515
Trre15g02843 543 PANTHER U BOX DOMAIN-CONTAINING 15 516 - -
Trre15g02843 543 CDD RING-Ubox_PUB 181 225 IPR045210 -
Trre15g02843 543 Gene3D - 232 538 IPR011989 -
Trre15g02843 543 ProSiteProfiles U-box domain profile. 179 225 IPR003613 GO:0004842|GO:0016567
Trre15g02843 543 SUPERFAMILY RING/U-box 181 227 - -
Trre15g02843 543 SMART arm_5 391 432 IPR000225 GO:0005515
Trre15g02843 543 SMART arm_5 307 348 IPR000225 GO:0005515
Trre15g02843 543 SMART arm_5 265 306 IPR000225 GO:0005515
Trre15g02843 543 SUPERFAMILY ARM repeat 248 517 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02843 Trre-Chr15 24545075 24546844 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02843 1 521 U-box Gene Family AT1G60190 37.434 5.63e-121 370
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02843 15 24545075 24546844 Trre15g02843 15 24545075 24546844 ECH