Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02834 ATGAAAAGACCATCTTCTTCATCTCATTATAATTCCAACAGATTCCAAGAATCAACCCGAACCCGCGCTTTTCAGAGACAACTACAACACATATTCCATTTACATGATTCAGGTCTAGATCAAGCTGTCATAAACACACTTCCTATTTTCAGCTACAAAGATTTATTGGGTTTGAAGGAACCTTTTGATTGTGCTGTATGTCTCTGTGAGTTTTCTGAGCAAGAGAAGCTGAGATTGGTTCCAATATGTAGCCATGCATTTCACATGAATTGTCTTGACACATGGCTTCTCTCAAATTCTACATGTCCTCTTTGTGGAGCAAATATCTCTAACTCTAGTTTCCCTTTGGAGAATATGAATGTTGATGATACTTTGGTTAGTCAAAGAGAAATAATTGTTGAGGAAGAAAAAGTTGGGAAAAGAGTGTTTTCTGTGAGACTTGGAAAGTTCAGAAGTAATGGATTGGATTTGGAGAATGGTAGTAGTTGTAGTTTGGATGAGAGGAGATGTTATTCAATGAGTTCATATCAGTATGTTTTTTGTGATTCAAATTTGCAAGTGGTTTTGTCTCAATCTTGTTGTGATGATGAAAATGGGAATGTAGAGGGAAAAAGGATAGGGAATACAACCAAAGGTGAGAGTTTCTCTGTTTCTAAGATATGGCTTTGGTCTAAGAAGAACAAATTTACTAGTTCTAATGCTGATTTTCCATGA 714 0.3613 MKRPSSSSHYNSNRFQESTRTRAFQRQLQHIFHLHDSGLDQAVINTLPIFSYKDLLGLKEPFDCAVCLCEFSEQEKLRLVPICSHAFHMNCLDTWLLSNSTCPLCGANISNSSFPLENMNVDDTLVSQREIIVEEEKVGKRVFSVRLGKFRSNGLDLENGSSCSLDERRCYSMSSYQYVFCDSNLQVVLSQSCCDDENGNVEGKRIGNTTKGESFSVSKIWLWSKKNKFTSSNADFP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02834 237 Pfam Ring finger domain 63 105 IPR001841 -
Trre15g02834 237 SMART ring_2 64 105 IPR001841 -
Trre15g02834 237 SUPERFAMILY RING/U-box 43 111 - -
Trre15g02834 237 CDD RING-H2_EL5-like 63 105 - -
Trre15g02834 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 114 IPR013083 -
Trre15g02834 237 ProSiteProfiles Zinc finger RING-type profile. 64 105 IPR001841 -
Trre15g02834 237 FunFam E3 ubiquitin-protein ligase ATL6 26 112 - -
Trre15g02834 237 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 12 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02834 Trre-Chr15 24477643 24478356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02834 23 234 C3H Transcription Factor Family AT2G18650 37.681 3.00e-46 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02834 15 24477643 24478356 Trre15g02834 15 24477643 24478356 ECH