Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02833 ATGGTTGATGTTGTACAGCACATGGAAACATGGGATATCACTTTCTCTTTACCGGAGAAGCTTGCTTTGGCCTGGACAAAGTTGTTTGCTACTTTACCATTTTTTCATTTGGACTTTTGGAGGACTGATAGTGGTTTCAATAAAGTTATCGTCAAGCGTCTTTTCATGAGCAAAGTTAACAAGCCACCACTTTCACTCTCTAGGTTGATTTGTTTCATGATGGGAAAGGTATGTTAA 237 0.3882 MVDVVQHMETWDITFSLPEKLALAWTKLFATLPFFHLDFWRTDSGFNKVIVKRLFMSKVNKPPLSLSRLICFMMGKVC 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02833 78 PANTHER 60S RIBOSOMAL PROTEIN L18 40 74 IPR000039 GO:0003735|GO:0005840|GO:0006412
Trre15g02833 78 Gene3D - 26 77 - -
Trre15g02833 78 Pfam Ribosomal protein 60S L18 and 50S L18e 40 74 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02833 Trre-Chr15 24476968 24477431 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02833 41 76 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 75.000 5.62e-12 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02833 K02883 - cit:102627244 64.6994