Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02813 ATGAAACAATATTTGTTGGAATGTACTCCATTTGCAGCAATGGTGATTGTAGAGTGCCTTGACGTAGGGTTGACCACATTGACTAAAGCAGCCATGTCCACAAAAGGAATGAACCATTTCATCTTTGTTCTCTACTCCAATGCTCTTGCCACTCTCATTCTCCTCCCTTCCTCTTTCCTCATCAACAGGTCAACAAGACAACCCCTTTCTTTCTCCCTTCTTGGAAAATTCTTCTTCCTCGGTCTTGTCGGCATAACTATCATGCAGAATTGTGTATTCACTGGCATAAGCTACAGCTCTCCCACCCTTGGATCAGCTATGAGCAACTTGACTCCAGCAATCACTTTTGTTCTAGCAGTCATCTTCAGGATGGAGAAGTTGGATGTTGGAAGCTCAATAAGCCAGATCAAAATTGTGGGGACTGTGGTGTCTATCTCAGGAGCATTTCTAGTGACCTTTTACAAGGGCGCTCCCATTGGCAGCTTTCAAACTCGGCACTCATCGCAACCATTGGTGTCTCTGTTGGCAGAAACCAGTAACTGGGTCACTGGAGGTCTCTTCCTAGCCATTGCCTCTATATCTCTTGCAGTATGGAATATTGCTCAGGCAGCAATTCTTAAGGGATATCCATCTCAGTTGACCATAGTTGCATTCTATTGCCTGTTTGGAACCTTTCAATGTGCAATACTTTCTCTGATTGTAGTCAAAGATCCAAGTTCCTGGAAACTAAGTCTTGACATTGAGCTAATCTCTATAATCTATTCAGCTATTTTCGGAAGTGTGGTGACATTTTCTGTGCTTACTTGGTGCATAGATAGGAAAGGACCTTTATTTGTTACCATGTTCAAGCCTGTTGGGATTGCCATTGCTGCATTTATGAGTGTTGCCTTCCTTGGTGAAACACTCCATATTGGCAGTGTCATCGGCGCACTAGTAATCGCCATTGGATTTTACGCAGTAATGTGGGCACAATCTAGAGAGAAAAATATGAAAGGCCTTGAAGTTAATGGATTACCATCATCCTCATCTGCCCAAGAAAGTCCTCTACTAGAGTCTCCATGA 1062 0.4322 MKQYLLECTPFAAMVIVECLDVGLTTLTKAAMSTKGMNHFIFVLYSNALATLILLPSSFLINRSTRQPLSFSLLGKFFFLGLVGITIMQNCVFTGISYSSPTLGSAMSNLTPAITFVLAVIFRMEKLDVGSSISQIKIVGTVVSISGAFLVTFYKGAPIGSFQTRHSSQPLVSLLAETSNWVTGGLFLAIASISLAVWNIAQAAILKGYPSQLTIVAFYCLFGTFQCAILSLIVVKDPSSWKLSLDIELISIIYSAIFGSVVTFSVLTWCIDRKGPLFVTMFKPVGIAIAAFMSVAFLGETLHIGSVIGALVIAIGFYAVMWAQSREKNMKGLEVNGLPSSSSAQESPLLESP 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02813 353 MobiDBLite consensus disorder prediction 334 353 - -
Trre15g02813 353 Pfam EamA-like transporter family 184 321 IPR000620 GO:0016020
Trre15g02813 353 Pfam EamA-like transporter family 25 152 IPR000620 GO:0016020
Trre15g02813 353 MobiDBLite consensus disorder prediction 335 353 - -
Trre15g02813 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 327 - -
Trre15g02813 353 PANTHER WAT1-RELATED PROTEIN 10 334 IPR030184 GO:0016020|GO:0022857
Trre15g02813 353 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02813 Trre-Chr15 24138288 24140248 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02813 2 352 Nodulin-like Gene Family AT3G28050 45.355 8.96e-89 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02813 - - psat:127073896 553.903