Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02781 ATGGCTGCCGCCGGCGAGATTTTCCGGTCGAATTTGACGGAATTGTTGGAGGAATCGCATTCAGGTGCTGATGAATTGCACGTGCTTGCTGTTGATGATAGTCTTGTTGATCGTAAAGTCATTGAACGATTGTTGAAGATTTCTTCATGCAAAGTTACGGTTGTGGAGAGTGCAAGAAGAGCTCTTCAGTATTTAGGATTGGATGAAGATGGAGAGAACAGTGATATTGGATTTGATGGTGTGAAGGTTAATTTGATAATGACTGATTATTCGATGCCAGGGATGACAGGATATGAACTATTGAAGAAAATCAAGGAGTCTTCTGTTTTTAGGGAGATTCCAGTGGTGATCATGTCGTCGGAGAATGTTTTAACTCGAATTGATAGGTGCCTCGAGGAAGGAGCAGAGGATTTTCTATTGAAGCCAGTCAAGTTGTCAGATGTAAGGCGCTTGAAAGATTTTATCATGAGAGGCGAAGTGAAGGATGGTAAGAAAAATTCTCTCAAACGAAGACGATCATCAGATGATTGCAGTCCATCTCTATCAACGACATTCTCACCAATGCGTCATTTGTGCGATCCACCATCATCAGTGTTCTCGCCACTCTCACCATCCACATTATCCTCTAAGAAATCTAGACTGTGA 645 0.4217 MAAAGEIFRSNLTELLEESHSGADELHVLAVDDSLVDRKVIERLLKISSCKVTVVESARRALQYLGLDEDGENSDIGFDGVKVNLIMTDYSMPGMTGYELLKKIKESSVFREIPVVIMSSENVLTRIDRCLEEGAEDFLLKPVKLSDVRRLKDFIMRGEVKDGKKNSLKRRRSSDDCSPSLSTTFSPMRHLCDPPSSVFSPLSPSTLSSKKSRL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02781 214 Pfam Response regulator receiver domain 28 149 IPR001789 GO:0000160
Trre15g02781 214 Gene3D - 26 186 - -
Trre15g02781 214 ProSiteProfiles Response regulatory domain profile. 27 156 IPR001789 GO:0000160
Trre15g02781 214 SMART REC_2 26 152 IPR001789 GO:0000160
Trre15g02781 214 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 168 IPR045279 GO:0009736
Trre15g02781 214 CDD REC_typeA_ARR 28 151 - -
Trre15g02781 214 SUPERFAMILY CheY-like 25 151 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02781 Trre-Chr15 23816756 23818350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02781 5 181 Response Regulator Gene Family AT3G48100 65.363 1.68e-76 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre15g02781 Response_reg 1.5e-20 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02781 K14492 - gmx:100796843 291.197