Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02769 ATGTCTTCTCCCTCCTCCGCTGCCGTCTCCGGCGAATTCATGCTCTTCGGAGTTAGAGTCGTCGTTGATTCCATGAGGAAAAGTGTCAGTATGAACAATCTCTCACAGTATGAACAACCTCAAGACAACAACAACAACAATAATATCAGCATCAAGGATGATAACAACAAAGACGTTCTCGCCGCCGGTTATGCCTCCGCCGATGACGCCGTTCCGAATAACTCCGGCAGAAACCGCGATCGCGAGCGTAAACGAGGGATTCCATGGACGGAGGAAGAGCACAAGCTGTTTTTGGTTGGATTGCAGAAAGTAGGGAAAGGTGATTGGAGAGGAATCTCAAGAAACTATGTCAAAACTCGAACGCCGACGCAGGTTGCAAGCCATGCTCAGAAGTACTTTCTCCGCCGAAGTAATCTCAATCGCCGTCGCCGTAGATCCAGCCTCTTTGATATCACCACCGACACGGTGTCTGCAATTCCAATGGAGGAAGAACAGGTCAAAAATCAAGACAGTGTTTCTCAATCACAGCCTATGTGCCCTGCAGCATCCCCTGAACCTAGAAAAAACAATGGATTTCCTTTTATGTCGATATTTGAGTTGGGTGTTAATGAGAGTCCAATGGAAGAACTCACTCTTGGACAAGGAAATGTGAAACAAAATTTCCCAATCAACAATCTATTCAATCCAATTCCTTTTGTTGTTTCAGATCCTAAAACTTCCACTGCCTCTGATAACACCTCTAGTTCTAGTTCATCAATTGACCCTCCAACACTTTCCCTTGGGTTGTCCTTCTCATCTGATCAAAGGAAGACATCATCAACACACTCCGCTTTACATGCAATGCCATGTTTCAACAATGGAGACAACATCATAAGCGTTGCTTAA 885 0.452 MSSPSSAAVSGEFMLFGVRVVVDSMRKSVSMNNLSQYEQPQDNNNNNNISIKDDNNKDVLAAGYASADDAVPNNSGRNRDRERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVKNQDSVSQSQPMCPAASPEPRKNNGFPFMSIFELGVNESPMEELTLGQGNVKQNFPINNLFNPIPFVVSDPKTSTASDNTSSSSSSIDPPTLSLGLSFSSDQRKTSSTHSALHAMPCFNNGDNIISVA 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02769 294 SUPERFAMILY Homeodomain-like 83 138 IPR009057 -
Trre15g02769 294 MobiDBLite consensus disorder prediction 64 87 - -
Trre15g02769 294 Pfam Myb-like DNA-binding domain 88 133 IPR001005 -
Trre15g02769 294 FunFam transcription factor MYB1R1 87 138 - -
Trre15g02769 294 ProSiteProfiles SANT domain profile. 89 137 IPR017884 -
Trre15g02769 294 MobiDBLite consensus disorder prediction 34 53 - -
Trre15g02769 294 PANTHER TRANSCRIPTION FACTOR KUA1 12 246 - -
Trre15g02769 294 MobiDBLite consensus disorder prediction 164 187 - -
Trre15g02769 294 ProSiteProfiles Myb-like domain profile. 81 133 IPR001005 -
Trre15g02769 294 Gene3D - 87 139 - -
Trre15g02769 294 MobiDBLite consensus disorder prediction 164 180 - -
Trre15g02769 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 137 IPR017930 -
Trre15g02769 294 NCBIfam myb-like DNA-binding domain, SHAQKYF class 84 135 IPR006447 GO:0003677
Trre15g02769 294 CDD SANT 88 133 IPR001005 -
Trre15g02769 294 MobiDBLite consensus disorder prediction 237 267 - -
Trre15g02769 294 SMART sant 85 135 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02769 Trre-Chr15 23592403 23594101 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre15g02769 Myb_DNA-binding 1.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02769 - - psat:127073868 462.996