Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02758 ATGAGCGAATTGTTACTTTTTGCTCTACATGATAATAATTTAAATGGACCAATACCTGGTACATTCAATGGATTACATAAACTTCAGCGATTGGACCTTAGCTACAATAGACTACAAGGATCATTTATTGAGGAGCTTTGTGAAACTAAGAGATTAGAATGGTTGAATCTTGGAAATAATAAAATTTCTGGAGTTTTACCAACATGTTTGGGAAATTTGACTTTTCTTCAAAATTTATACATAGGAAATAACCGTTTCAACTCTAGGATACCTTTTTCTCTTTGGAGTCTCACAGATATCTTAGAGATAGATTTGTACTCTAATGCAGTCATCGGCAATCTTCCACCTGAAATTGGGAATTTGAGAGCAATTACACTTTTGGATCTATCTAGAAATCAAATTTCAGGAAACATTCCTGCAACAATCAGTTCCTTAAAAACTTTGCAGAATCTCTCCTTAGCACATAACAAACTGATGGGATCAATTCCCAAATCACTTTATCAAATGGTAAGCCTGATGTCCTTGGACTTGTCCCAAAATATGCTAACAGGTGTTATTCCAAAATCCTTAGAATCACTTTTGTATCTTCAAAACATCAACTTTTCGTATAACAGATTACAAGGAGAGATTCCTGATGGTGGAGTTTTCAAAAAGTTGACGGCTCAATCTTTTATGCATAATGAAGCGCTTTGTGGCAATCCTCGCCTACATGTACCTCTGTGTGATAATCAAGTTAAGAGAAGTTTAATGGAAAAGTTGTTACTCAAATGCATAATTCCCATAGTTGTCTCAACCATTTTGATTGTTGCAAGCATCATAATTTTGAAAGGTAAGAAAAGGAAAAAGGTTGCAAATACTCTTGAAAGGGGTTTGTCAACTTTAGGTGCTCCAAGAAGAATATCCTATTATGAACTTGTGCAAGCAACTAATGGATTCAATGAGAGTAACTTACTTGGAAAGGGGGGATTTGGCTCTGTGTATGAGGGGAAGCTTCCTGATGTGGTTCATTGTGATCTAAAGCCAACTAATGTGTTGTTGGATGAAAATATGGTTGCACATGTTAGTGATTTTGGTATTGCCAAGCTCATGGATGAAGGACAATCTAAAACACATACAGAGACATTAGCTACTATTGGATACCTTGCACCAGAGTATGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTATGGGATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAGCAGATGATATGTTTGTTGCAGGGCTAAGTTTGAAAACATGGATCAGTGGATCGTTGCCTAATTCTATTCTTGAGGTCTTGGATTCTAATTTAGTCCAACAATATGGGGAGCAAATTGATGAAATAGTTACATACATGTCAACTATTTTTGGTTTAGCCCTTAATTGTTGTGAATATTCACCTGAAGCAAGAATTAATATGGCAGATGTTACTGCTTCCCTAATCAAACTCAAGAATTTGGTTCTTAGCAGAAACATGGTCTAG 1503 0.3586 MSELLLFALHDNNLNGPIPGTFNGLHKLQRLDLSYNRLQGSFIEELCETKRLEWLNLGNNKISGVLPTCLGNLTFLQNLYIGNNRFNSRIPFSLWSLTDILEIDLYSNAVIGNLPPEIGNLRAITLLDLSRNQISGNIPATISSLKTLQNLSLAHNKLMGSIPKSLYQMVSLMSLDLSQNMLTGVIPKSLESLLYLQNINFSYNRLQGEIPDGGVFKKLTAQSFMHNEALCGNPRLHVPLCDNQVKRSLMEKLLLKCIIPIVVSTILIVASIIILKGKKRKKVANTLERGLSTLGAPRRISYYELVQATNGFNESNLLGKGGFGSVYEGKLPDVVHCDLKPTNVLLDENMVAHVSDFGIAKLMDEGQSKTHTETLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRKKPADDMFVAGLSLKTWISGSLPNSILEVLDSNLVQQYGEQIDEIVTYMSTIFGLALNCCEYSPEARINMADVTASLIKLKNLVLSRNMV 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02758 500 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Trre15g02758 500 SUPERFAMILY L domain-like 3 234 - -
Trre15g02758 500 Gene3D Ribonuclease Inhibitor 1 248 IPR032675 -
Trre15g02758 500 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 93 - -
Trre15g02758 500 Gene3D Transferase(Phosphotransferase) domain 1 322 497 - -
Trre15g02758 500 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515
Trre15g02758 500 Pfam Leucine Rich Repeat 51 73 IPR001611 GO:0005515
Trre15g02758 500 PRINTS Leucine-rich repeat signature 169 182 - -
Trre15g02758 500 PRINTS Leucine-rich repeat signature 28 41 - -
Trre15g02758 500 SUPERFAMILY Protein kinase-like (PK-like) 298 491 IPR011009 -
Trre15g02758 500 SMART LRR_typ_2 169 192 IPR003591 -
Trre15g02758 500 SMART LRR_typ_2 121 145 IPR003591 -
Trre15g02758 500 SMART LRR_typ_2 25 50 IPR003591 -
Trre15g02758 500 SMART LRR_typ_2 51 72 IPR003591 -
Trre15g02758 500 SMART LRR_typ_2 73 97 IPR003591 -
Trre15g02758 500 ProSiteProfiles Protein kinase domain profile. 75 495 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02758 500 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 115 238 - -
Trre15g02758 500 SMART serkin_6 245 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02758 500 PANTHER OS04G0122200 PROTEIN 2 330 - -
Trre15g02758 500 Pfam Protein kinase domain 334 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02758 Trre-Chr15 23468976 23470940 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02758 9 335 Receptor kinase-like Gene Family AT4G08850 31.361 2.12e-46 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre15g02758 Pkinase 5.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02758 - K13420 mtr:25502843 590.497