Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02744 ATGGCTGGTTTATTCTCATTAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGAATCAAACCAACAAGGTCAAATTCCTCCACAAGAGAATCTACTTTGGTACAACAAAAACGACGACGTTTCATCTTACAGAGGAAATTTAGAATTATGGAACCAACACCAACAGCAGCAGCAGCAGCAGCAACAACAAGATGATATGCATGGTGTTGCAAGGCCGTTCTTTTCGCGAGATCTCTATGGATTAGGTGTGGGACCCAGTAGGGTTTCATCAGATGATCAGTCGTCACCGAGATCGGCTGCTGCTGCTGCTGCTTTTAATATGACGGTAAGGTCATCATCTGGTGGTGGTGTTGTTGAAGGAATTAGCTGTCAAGATTGTGGTAACCAAGCTAAAAAAGATTGTACTCACATGAGATGTAGAACTTGTTGTAAGAGTCGTGGATTTCATTGTCAAACTCATGTTAAAAGTACTTGGGTTCCAGCTTCAAGACGCCGTGAACGTCAACAACAATTATCTTCACCATCTTCATTACAACAACAACAACATCATCAAAGAGATATTTCAAAACGACCTAGAGATGCTCTTGTCCCCACACGCAATTTCCCTTCAGGGTTAGAGGAAGCAAATTTTCCAGCTGTGGTTAGCTCACCAGCAGAGTTTAGGTGTGTAAGGGTTAGTTCAATTGATGATGCAGAAGATAGGTATGCATATCAAACGGCTGTACACATTGGAGGACATTTGTTCAAAGGAATTCTCTATGACTTTGGTCCAGAAACTAATAGCAACAATAACAACAATACTAATTATAATAGTAGTAATTACATGATTGGGGAAACTTCCGGTGGCAGCGCTGGTGTTGGTGTCGCTCAGCCGTTGAACCTAATCGCCGACTCTGATGTCACTGTTGCTGCCTCTTCGGGGGCACTTGTTGATCCTTCCTCCTTGTATTCAGCTGCTGCCCCGATTAACGCCTTCATGGCGGCTAGTGGTACGCAATTCTTCCCTCGCCCGAGATCTTGA 1029 0.4441 MAGLFSLGGGGGGGGGGGGRESNQQGQIPPQENLLWYNKNDDVSSYRGNLELWNQHQQQQQQQQQQDDMHGVARPFFSRDLYGLGVGPSRVSSDDQSSPRSAAAAAAFNMTVRSSSGGGVVEGISCQDCGNQAKKDCTHMRCRTCCKSRGFHCQTHVKSTWVPASRRRERQQQLSSPSSLQQQQHHQRDISKRPRDALVPTRNFPSGLEEANFPAVVSSPAEFRCVRVSSIDDAEDRYAYQTAVHIGGHLFKGILYDFGPETNSNNNNNTNYNSSNYMIGETSGGSAGVGVAQPLNLIADSDVTVAASSGALVDPSSLYSAAAPINAFMAASGTQFFPRPRS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02744 342 MobiDBLite consensus disorder prediction 163 185 - -
Trre15g02744 342 Pfam Domain of unknown function (DUF702) 123 261 - -
Trre15g02744 342 NCBIfam LRP1 C-terminal domain 213 260 IPR006511 -
Trre15g02744 342 MobiDBLite consensus disorder prediction 163 204 - -
Trre15g02744 342 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 21 326 IPR007818 GO:0003700|GO:0006355
Trre15g02744 342 NCBIfam putative zinc finger domain, LRP1 type 125 167 IPR006510 -
Trre15g02744 342 MobiDBLite consensus disorder prediction 1 39 - -
Trre15g02744 342 MobiDBLite consensus disorder prediction 20 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02744 Trre-Chr15 23369692 23371503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02744 1 342 C2H2 Transcription Factor Family AT3G51060 46.056 6.88e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Trre15g02744 DUF702 1.2e-63 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02744 - - gmx:100781981 333.183