Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02708 ATGAAAGATAATAATGGTTGTGGTGGCGTGGTTTTTTCTGAACTAATAAAACTACTGTTGAAAGAGCCCGGGGAGAAAGCTGTGAAGCATAAAAGCAGAAATTCATCCTCTCAGAAATCTGATGCAGGACCAACTACAATAATCACTGAACATGTGGTTAGAGATGCCACATGGAAGGGTGTTTTTTTGAAGAGAAAATCTCTGGCCCTGCTTACTCAGAATTTTGTCAAGCTCTTTGTCTGCTCTAATCTGGAAATGATATGCCTTGATGATGCCGCAAGGTTGTTGCTTGGAGATGCATATAATTCATCAACAATGAGAAGGGTTTTGAACCTCCTCAATATAACCGCCGCAATTTAA 360 0.4 MKDNNGCGGVVFSELIKLLLKEPGEKAVKHKSRNSSSQKSDAGPTTIITEHVVRDATWKGVFLKRKSLALLTQNFVKLFVCSNLEMICLDDAARLLLGDAYNSSTMRRVLNLLNITAAI 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02708 119 Gene3D - 63 119 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02708 Trre-Chr15 22915537 22917339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02708 64 119 E2F-DP Transcription Factor Family AT3G48160 52.459 1.69e-14 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Trre15g02708 E2F_TDP 4.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02708 K09391 - gmx:100806151 70.8626