Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02702 ATGAAAACTCGAAATTCTGATTCATCTTCCAAATCCACAATCCCTAAAAAGACACCGTCGGCGATAAAATCCGCCGGAGAATTTCCCGCCGCAAAGCGCAAATTTCCGTCCAAAGTCAGAAACGCGAATAAGTTGGAAACATCGCCCGTAACGGATCCGGATCAATCTCAGAAGCAGAACTCATTTGCGAGTACTACTACTATGAAATCTGTAAAGAGGAAAACACCAACAAAACCGAGAACAAAAGTGGTTGCCGACATTCCAAATGTGGAAGAGCAATTGGGGGCTGAAGTTGATGAAACTATAGTTGTAGATAATTATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAATGTTACGGACATTGATGTGGATAATATCGAGAGTGAGAAAGAAGGGGAACAGAGTTTTGGATCTATTGGGTTAACTGATGAGAGGGAACAGAAGCCTATGGAAGTGGATGAACCTGTTATTGTAAAAGAGTGTGAATTGGTCGAAAAGGGAAAGAGCGTGGAAGATATTGAACCAATTGTTTCTCAGGATGCTTCTCTATCTTTTAAACAACCGGGTTGCACCATTGTGGACCTCAATATATCTGTGGACGATAATGAAGTTTATACTGGTGCAAAGGAGGGAGGGGAGGAGTTGAAAGAGGAAGAGTTGAAAGCAAATGACGGAGAAAAAGGAACGGATGAGTTGAAAGAGCAAGAAGGAGAGAAAGGAAAAGAAGAGTTTAACCAACAAAAAAGAGAGAAAGAAAAGGAAGAGTTTAAAATACAAGGAGAAAAAGGAACGGAAGAGTTGAAAGAACAAGGAGGAGATAAAGAAATGGAAGAGTATAAAATACAGGAAGTAGAAAAAGGAAAGGACGAGCTGAAGGAACATAACGGAGAGAAGGGAAAGGAAGTGATAAAAGAATCAGTAGGAGAGAAAGAAAAAGAAGATCTGAAAGTACGTGAAGGAGAGAAAAGGAATGAAGAGTTTAAAGTAGAGGAGATAGAAAAAGCAAAAGGAGAAGAAACAAACATTATTGGACATGAAGAGCACTCTAGCGTAGAAGTACAAGTCAAGCTGCAAAAAGATGTTGATCCCAAAAATTATGGTGTTGAAGGGCCAAAGAGTGATGAATTGATAGATCTCGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCCAGAGGAAGATCCAGAAGAAGATCCGGAGGAACCGCCCAAAGAAACTGAGACATTGGATGAAGAGCATATGGAACTTGAAGCCATTGCAAAGGAGCGAAAAATTAGGAAAGAGCATGAGATATTCGTTGGTGGATTGGATCGTGAGACTACAGAGGAAGATCTGAGGAAGGTTTTTCAGAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGTCTATGCTTTTGTGAAGTTTTCTAGAAAGGAGCACGCAAAGAAAGCTTTGTCTGAAATGAAAAACCCTGTTATACATGGAAAACGATGTGGCACCGCACCTTGTGAGGATAATGACACATTATTCTTAGGAAATATTTGCAATACATGGACAAAAGAAGCTTTTATACAGAAGCTGAAGGATTTTGGTGTTGAAGGGGTTGAAAGCATTACGCTTGAACCAGATGTTCAACATGAAAGCTTGAGCCAGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTAGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCCAAGGTAGCCTTTGCCGAACCGATACATGAACCAGACTCAGAGATAATGGCACAAGTAAAGTCTGTGTTTATTGACGGTCTTCCTCTTGACTGGGACGAAGATCATGTGAGGGAGCTATTGAAATCGTATGGTGAAATTGTAAGAATTGTTTTGTCAAGGAATATGTCCACAGCTAAGAGTAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACGGTGTAAATAAATTAGAATTGGGAGATGGGAAATCAGAGATAAAAGTGAGGGCCAGGCTTTCAAAACCTTTGCCTAAAATGCTGGCTGTTAAAGGTGGCATGTGCGGTGATCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGGGTTTATATCATCATGGGGGGCGCAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCCTGATTTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGGAGCTATGAGAGGTGGATATCATGCAGGTGGTCGAGGAGGTGCTCCATTTGCTGGTCCATCTAGACATTACCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCTGGTGAGCCTCTTCCTCCAAGAAGGCCCTACTCTTCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGACGATATGCGTGGAATCAAACGTCCACTTTATATGACTGACCCCGAACCTGATTACATGGGGCCCAATAGACTTCGCCCCCGATTTGATTATGCAGATCCATCTATGTTTCATGGAACTCGTTACCATGATTATGCTGGCGGCAGACCGTACCCACAGGACCATTATGGTTCTGATGGTGGAGGTCCATATTCATCGTTTTATGGGGGCGATGGCCCACATGGACACAGACACTACTATTAG 2784 0.4303 MKTRNSDSSSKSTIPKKTPSAIKSAGEFPAAKRKFPSKVRNANKLETSPVTDPDQSQKQNSFASTTTMKSVKRKTPTKPRTKVVADIPNVEEQLGAEVDETIVVDNYEAAERVEEAGNVTDIDVDNIESEKEGEQSFGSIGLTDEREQKPMEVDEPVIVKECELVEKGKSVEDIEPIVSQDASLSFKQPGCTIVDLNISVDDNEVYTGAKEGGEELKEEELKANDGEKGTDELKEQEGEKGKEEFNQQKREKEKEEFKIQGEKGTEELKEQGGDKEMEEYKIQEVEKGKDELKEHNGEKGKEVIKESVGEKEKEDLKVREGEKRNEEFKVEEIEKAKGEETNIIGHEEHSSVEVQVKLQKDVDPKNYGVEGPKSDELIDLGEQGRVELEEEDPEEDPEEDPEEPPKETETLDEEHMELEAIAKERKIRKEHEIFVGGLDRETTEEDLRKVFQRIGEVVEVRLHKNSSTNKNKVYAFVKFSRKEHAKKALSEMKNPVIHGKRCGTAPCEDNDTLFLGNICNTWTKEAFIQKLKDFGVEGVESITLEPDVQHESLSQGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPDSEIMAQVKSVFIDGLPLDWDEDHVRELLKSYGEIVRIVLSRNMSTAKSKDYGFVDFSTHEAALACVDGVNKLELGDGKSEIKVRARLSKPLPKMLAVKGGMCGDLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFNRGRGLYHHGGRSQIGRMGFRDDPDFSMHPDFHQWQFGPQGAMRGGYHAGGRGGAPFAGPSRHYHDRAWYGIPDGGPGEPLPPRRPYSSGGQFDMPFMGRHVDDPYLYDDDMRGIKRPLYMTDPEPDYMGPNRLRPRFDYADPSMFHGTRYHDYAGGRPYPQDHYGSDGGGPYSSFYGGDGPHGHRHYY 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02702 927 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 286 927 - -
Trre15g02702 927 SMART rrm1_1 610 685 IPR000504 GO:0003723
Trre15g02702 927 SMART rrm1_1 432 505 IPR000504 GO:0003723
Trre15g02702 927 SMART rrm1_1 512 589 IPR000504 GO:0003723
Trre15g02702 927 MobiDBLite consensus disorder prediction 41 72 - -
Trre15g02702 927 MobiDBLite consensus disorder prediction 114 155 - -
Trre15g02702 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 609 691 IPR000504 GO:0003723
Trre15g02702 927 MobiDBLite consensus disorder prediction 359 412 - -
Trre15g02702 927 MobiDBLite consensus disorder prediction 1 86 - -
Trre15g02702 927 SUPERFAMILY RNA-binding domain, RBD 601 683 IPR035979 GO:0003676
Trre15g02702 927 Gene3D - 510 595 IPR012677 -
Trre15g02702 927 SUPERFAMILY RNA-binding domain, RBD 432 576 IPR035979 GO:0003676
Trre15g02702 927 Gene3D - 597 751 IPR012677 -
Trre15g02702 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 433 501 IPR000504 GO:0003723
Trre15g02702 927 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 611 677 IPR000504 GO:0003723
Trre15g02702 927 MobiDBLite consensus disorder prediction 385 407 - -
Trre15g02702 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 511 595 - -
Trre15g02702 927 MobiDBLite consensus disorder prediction 718 751 - -
Trre15g02702 927 MobiDBLite consensus disorder prediction 359 384 - -
Trre15g02702 927 FunFam Heterogeneous nuclear ribonucleoprotein Q 596 749 - -
Trre15g02702 927 Gene3D - 373 508 IPR012677 -
Trre15g02702 927 MobiDBLite consensus disorder prediction 209 322 - -
Trre15g02702 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 431 501 IPR000504 GO:0003723
Trre15g02702 927 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 511 596 IPR000504 GO:0003723
Trre15g02702 927 CDD RRM_SF 433 502 - -
Trre15g02702 927 MobiDBLite consensus disorder prediction 114 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02702 Trre-Chr15 22873308 22878028 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02702 432 677 Eukaryotic Initiation Factors Gene Family AT1G22760 24.710 2.87e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02702 - - tpra:123920681 1243.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02702 15 22873308 22878028 Trre15g02702 15 22873308 22878028 ECH