Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02701 ATGAAAACTCGAAATTCTGATTCATCTTCCAAATCCACAATCCCTAAAAAGACACCGTCGGCGATAAAATCCGCCGGAGAATTTCCCGCCGCAAAGCGCAAATTTCCGTCCAAAGTCAGAAACGCGAATAAGTTGGAAACATCGCCCGTAACGGATCCGGATCAATCTCCAGAGAAGCAGAACTCATTTGCGAGTACTACTACTATGAAATCTGTAAAGAGGAAAACACCAACAAAACCGAGAACAAAAGTGGTTGCCGACATTCCAAATGTGGAAGAGCAATTGGGGGCTGAAGTTGATGAAACTATAGTTGTAGATAATTATGAGGCAGCAGAGAGAGTGGAAGAAGCTGGAAATGTTACGGACATTGATGTGGATAATATCGAGAGTGAGAAAGAAGGGGAACAGAGTTTTGGATCTATTGGGTTAACTGATGAGAGGGAACAGAAGCCTATGGAAGTGGATGAACCTGTTATTGTAAAAGAGTGTGAATTGGTCGAAAAGGGAAAGAGCGTGGAAGATATTGAACCAATTGTTTCTCAGGATGCTTCTCTATCTTTTAAACAACCGGGTTGCACCATTGTGGACCTCAATATATCTGTGGACGATAATGAAGTTTATACTGGTGCAAAGGAGGGAGGGGAGGAGTTGAAAGAGGAAGAGTTGAAAGCAAATGACGGAGAAAAAGGAACGGATGAGTTGAAAGAGCAAGAAGGAGAGAAAGGAAAAGAAGAGTTTAACCAACAAAAAAGAGAGAAAGAAAAGGAAGAGTTTAAAATACAAGGAGAAAAAGGAACGGAAGAGTTGAAAGAACAAGGAGGAGATAAAGAAATGGAAGAGTATAAAATACAGGAAGTAGAAAAAGGAAAGGACGAGCTGAAGGAACATAACGGAGAGAAGGGAAAGGAAGTGATAAAAGAATCAGTAGGAGAGAAAGAAAAAGAAGATCTGAAAGTACGTGAAGGAGAGAAAAGGAATGAAGAGTTTAAAGTAGAGGAGATAGAAAAAGCAAAAGGAGAAGAAACAAACATTATTGGACATGAAGAGCACTCTAGCGTAGAAGTACAAGTCAAGCTGCAAAAAGATGTTGATCCCAAAAATTATGGTGTTGAAGGGCCAAAGAGTGATGAATTGATAGATCTCGGAGAACAAGGGAGGGTGGAGCTTGAGGAGGAAGATCCAGAGGAAGATCCAGAAGAAGATCCGGAGGAACCGCCCAAAGAAACTGAGACATTGGATGAAGAGCATATGGAACTTGAAGCCATTGCAAAGGAGCGAAAAATTAGGAAAGAGCATGAGATATTCGTTGGTGGATTGGATCGTGAGACTACAGAGGAAGATCTGAGGAAGGTTTTTCAGAGGATTGGGGAGGTAGTGGAAGTCAGGTTGCATAAAAATTCTTCAACAAATAAAAATAAGGTCTATGCTTTTGTGAAGTTTTCTAGAAAGGAGCACGCAAAGAAAGCTTTGTCTGAAATGAAAAACCCTGTTATACATGGAAAACGATGTGGCACCGCACCTTGTGAGGATAATGACACATTATTCTTAGGAAATATTTGCAATACATGGACAAAAGAAGCTTTTATACAGAAGCTGAAGGATTTTGGTGTTGAAGGGGTTGAAAGCATTACGCTTGAACCAGATGTTCAACATGAAAGCTTGAGCCAGGGTTTTGCATTCCTTGAGTTTTCTTGTCATGCTGATGCCATGCTAGCATACAAGAGACTTCAAAAGCCTGATGTCATCTTTGGTCATGCTGAGCGAACTGCCAAGGTAGCCTTTGCCGAACCGATACATGAACCAGACTCAGAGATAATGGCACAAGTAAAGTCTGTGTTTATTGACGGTCTTCCTCTTGACTGGGACGAAGATCATGTGAGGGAGCTATTGAAATCGTATGGTGAAATTGTAAGAATTGTTTTGTCAAGGAATATGTCCACAGCTAAGAGTAAGGATTATGGATTTGTCGATTTTTCCACACATGAAGCTGCTTTAGCTTGTGTTGACGGTGTAAATAAATTAGAATTGGGAGATGGGAAATCAGAGATAAAAGTGAGGGCCAGGCTTTCAAAACCTTTGCCTAAAATGCTGGCTGTTAAAGGTGGCATGTGCGGTGATCTCCGCATTGGTCAGGCTAGGAGTGAAGCCTACCCAAGATCCGAAAGGGGTTTTGGGCGGGGGCGGGGAAGACAGCCCTTCAACAACAGGGGAAATTTCAACAGGGGCAGGGGTTTATATCATCATGGGGGGCGCAGTCAAATTGGAAGAATGGGTTTTCGGGATGACCCTGATTTTAGTATGCATCCGGATTTTCATCAGTGGCAATTTGGTCCACAAGGAGCTATGAGAGGTGGATATCATGCAGGTGGTCGAGGAGGTGCTCCATTTGCTGGTCCATCTAGACATTACCATGATAGAGCATGGTATGGTATCCCTGATGGAGGCCCTGGTGAGCCTCTTCCTCCAAGAAGGCCCTACTCTTCAGGTGGACAGTTTGACATGCCTTTTATGGGAAGGCATGTTGATGATCCATATCTATATGATGACGATATGCGTGGAATCAAACGTCCACTTTATATGACTGACCCCGAACCTGATTACATGGGGCCCAATAGACTTCGCCCCCGATTTGATTATGCAGATCCATCTATGTTTCATGGAACTCGTTACCATGATTATGCTGGCGGCAGACCGTACCCACAGGACCATTATGGTTCTGATGGTGGAGGTCCATATTCATCGTTTTATGGGGGCGATGGCCCACATGGACACAGACACTACTATTAG 2787 0.4306 MKTRNSDSSSKSTIPKKTPSAIKSAGEFPAAKRKFPSKVRNANKLETSPVTDPDQSPEKQNSFASTTTMKSVKRKTPTKPRTKVVADIPNVEEQLGAEVDETIVVDNYEAAERVEEAGNVTDIDVDNIESEKEGEQSFGSIGLTDEREQKPMEVDEPVIVKECELVEKGKSVEDIEPIVSQDASLSFKQPGCTIVDLNISVDDNEVYTGAKEGGEELKEEELKANDGEKGTDELKEQEGEKGKEEFNQQKREKEKEEFKIQGEKGTEELKEQGGDKEMEEYKIQEVEKGKDELKEHNGEKGKEVIKESVGEKEKEDLKVREGEKRNEEFKVEEIEKAKGEETNIIGHEEHSSVEVQVKLQKDVDPKNYGVEGPKSDELIDLGEQGRVELEEEDPEEDPEEDPEEPPKETETLDEEHMELEAIAKERKIRKEHEIFVGGLDRETTEEDLRKVFQRIGEVVEVRLHKNSSTNKNKVYAFVKFSRKEHAKKALSEMKNPVIHGKRCGTAPCEDNDTLFLGNICNTWTKEAFIQKLKDFGVEGVESITLEPDVQHESLSQGFAFLEFSCHADAMLAYKRLQKPDVIFGHAERTAKVAFAEPIHEPDSEIMAQVKSVFIDGLPLDWDEDHVRELLKSYGEIVRIVLSRNMSTAKSKDYGFVDFSTHEAALACVDGVNKLELGDGKSEIKVRARLSKPLPKMLAVKGGMCGDLRIGQARSEAYPRSERGFGRGRGRQPFNNRGNFNRGRGLYHHGGRSQIGRMGFRDDPDFSMHPDFHQWQFGPQGAMRGGYHAGGRGGAPFAGPSRHYHDRAWYGIPDGGPGEPLPPRRPYSSGGQFDMPFMGRHVDDPYLYDDDMRGIKRPLYMTDPEPDYMGPNRLRPRFDYADPSMFHGTRYHDYAGGRPYPQDHYGSDGGGPYSSFYGGDGPHGHRHYY 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02701 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 612 678 IPR000504 GO:0003723
Trre15g02701 928 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 434 502 IPR000504 GO:0003723
Trre15g02701 928 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 287 928 - -
Trre15g02701 928 MobiDBLite consensus disorder prediction 360 413 - -
Trre15g02701 928 Gene3D - 374 509 IPR012677 -
Trre15g02701 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 610 692 IPR000504 GO:0003723
Trre15g02701 928 Gene3D - 598 752 IPR012677 -
Trre15g02701 928 MobiDBLite consensus disorder prediction 210 323 - -
Trre15g02701 928 Gene3D - 511 596 IPR012677 -
Trre15g02701 928 SUPERFAMILY RNA-binding domain, RBD 433 577 IPR035979 GO:0003676
Trre15g02701 928 FunFam Heterogeneous nuclear ribonucleoprotein Q 512 596 - -
Trre15g02701 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 512 597 IPR000504 GO:0003723
Trre15g02701 928 MobiDBLite consensus disorder prediction 386 408 - -
Trre15g02701 928 CDD RRM_SF 434 503 - -
Trre15g02701 928 MobiDBLite consensus disorder prediction 41 73 - -
Trre15g02701 928 MobiDBLite consensus disorder prediction 115 133 - -
Trre15g02701 928 SUPERFAMILY RNA-binding domain, RBD 602 684 IPR035979 GO:0003676
Trre15g02701 928 SMART rrm1_1 433 506 IPR000504 GO:0003723
Trre15g02701 928 SMART rrm1_1 513 590 IPR000504 GO:0003723
Trre15g02701 928 SMART rrm1_1 611 686 IPR000504 GO:0003723
Trre15g02701 928 MobiDBLite consensus disorder prediction 719 752 - -
Trre15g02701 928 MobiDBLite consensus disorder prediction 360 385 - -
Trre15g02701 928 MobiDBLite consensus disorder prediction 1 87 - -
Trre15g02701 928 MobiDBLite consensus disorder prediction 115 156 - -
Trre15g02701 928 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 432 502 IPR000504 GO:0003723
Trre15g02701 928 FunFam Heterogeneous nuclear ribonucleoprotein Q 597 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02701 Trre-Chr15 22873308 22878028 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02701 433 678 Eukaryotic Initiation Factors Gene Family AT1G22760 24.710 2.85e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02701 - - tpra:123920681 1248.42