Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02670 ATGGCAGACATAGTAAAACAACTTTTAGCAAAACCGATTCAATTAGCAGACCAAGTAAGCAAAGCAGCAGAAGAAGGAAGTTCATCTTTCAAACAAGAATGTTTAGAACTTAAATCCAAAACCGAAAAACTCGCTTCTCTTCTCCGACAAGCTGCAAGATCAAGCTCCGATTTATACGAAAGACCAACACGTCGAATCATCGGAGACACCGAACAAGTTCTCGAAAAAGCATTAACCTTAGTTCTTAAATGTAAAGTCAACGGTCTCATGAAACGCGTTTTCAGCATAGTACCATCTGCTGCTTTCAGGAAAATGTCTTCTCATCTTGAGAATTCAATCGGTGATGTTTCATGGCTTCTTCGTGTTTCAGCTCCGGCTGAAGAAGGTAGTTATGAATGTCTTGGTCTTCCACCTATTGCTTCTAATGAACCGATTTTAGGTTTAATTTGGGAACAGATTGCGATTCTTCATAACGGTTCTTTTGATGATCGATCTGATGCTGCTGCTTCTTTGGTTTCGCTTGTTCGTGATAATGATCGGAATGGTAAATTGATTATTGAAGAAGGTGGTGTTGGTCCTTTGTTGAAACTTTTGAAAGAAGGTAAAAAAGAAGGTCAAGAAAATGCTGCTAAAGCTATTGGACTTTTGGGTCGTGATGCCGAGAGTGTTGAGGTTATGATTCATGCTGGTGTTTGTTCTGTTTTCGCGAAAATTCTTAAAGAAGGTCCTATGAAAGTTCAAGCTGTTGTAGCTTGGGCTGTTTCTGAACTTGTTTCTAAGTATCCTAAATGTCAAGATGTTTTTGCTCAGCATAATATTGTTAGGTTGCTTGTTAGTCATATTGCATTTGAAACTGTTCAGGAACATAGTAAATATGCCATTGTTAGTAATAAGCCGAATTCGATTCATGCTGTTGTGATGGCTAGTAGTAATGGTGGTGGTAATAATGGCGGTGATATATCGGGTTCGAATGATGTGAAAAAAGAGAGTGAAGATGAGGTGAAAATTCGGATGAATCATCCTTTAGGTGATAGGTCTACAAATCAGATGCATAAAGTGGTGACAAGTACTATGGCAAAGCATGCTGCAAGTGCAAATAGCAACAAGAATCAGAACACTAATGAAAGCGGTGAAGTGGTTCTAAACTCTCAGTCTCAGGTGGCTGGTCATTCAAATGGGAATGGGAACGGGAATGGTAACACGAAGCAAAGTTATTCGTATTCTGGAATTAACATGAAGGGAAGGGAACTTGAGGATGCTGAGAGTAAGGCTCACATGAAGGCAATGGCAGCGAAGGCTCTTAGGTATTTAGCAAAGGGTAACTCGGGGATTTGTCGTAGCATAACAGAATCAAGGGCTTTGTTATGCTTTGCGATTCTACTTGAGAAAGGACCTGAAGAAGTGAAGTATAATTCTGCTTTGGCGTTGAAAGAGATTACTGCAGTGGCTGAGGAAGATCCTGAATTGAGAAGATCGGCGTTCAAACCGAACACTCCAGCTTGTAAAGCTGTTGTTGATCAAGTGATTGATATTATCGACAAAGAAGATAAGAGACTCCTGATTCCTTGTATCAAGGTTATTGGGAGTTTGGCAAGGACGTTCAGGGCAACTGAGACAAGGATAATCGGTCCTTTGGTTCGACTTCTTGACGAAAGAGAGGCTGAAGTATCAAAAGAGGCTGCAGACTCACTCGCGAAATTTGCCTGCAACGATAACTATCTCCACCTTGATCACTCTAAGGCAATTATAAGCTTTGGTGGTGCAAAACACTTGGTTCAGCTTGTGTATCTCGGGGAGCAGCCAGTTCAACATTCTGCCTTGGTTCTGCTATCCTATATTGCATTGCACGTGCCAGACAGCGAAGAACTTGCTCGGGCTGAGATTCTTGGAGTGCTTGAATGGGCGTCCAAGCAACCTAACATGACTCAGCATGAAACCATTGAGGCTTTGTTGCAAGAATCCAAGAGTAGGCTTGAGCTTTACCAGTCTAGAGGTTCAAGAGGGTTCCAAAAACTACATCAATAA 2025 0.4133 MADIVKQLLAKPIQLADQVSKAAEEGSSSFKQECLELKSKTEKLASLLRQAARSSSDLYERPTRRIIGDTEQVLEKALTLVLKCKVNGLMKRVFSIVPSAAFRKMSSHLENSIGDVSWLLRVSAPAEEGSYECLGLPPIASNEPILGLIWEQIAILHNGSFDDRSDAAASLVSLVRDNDRNGKLIIEEGGVGPLLKLLKEGKKEGQENAAKAIGLLGRDAESVEVMIHAGVCSVFAKILKEGPMKVQAVVAWAVSELVSKYPKCQDVFAQHNIVRLLVSHIAFETVQEHSKYAIVSNKPNSIHAVVMASSNGGGNNGGDISGSNDVKKESEDEVKIRMNHPLGDRSTNQMHKVVTSTMAKHAASANSNKNQNTNESGEVVLNSQSQVAGHSNGNGNGNGNTKQSYSYSGINMKGRELEDAESKAHMKAMAAKALRYLAKGNSGICRSITESRALLCFAILLEKGPEEVKYNSALALKEITAVAEEDPELRRSAFKPNTPACKAVVDQVIDIIDKEDKRLLIPCIKVIGSLARTFRATETRIIGPLVRLLDEREAEVSKEAADSLAKFACNDNYLHLDHSKAIISFGGAKHLVQLVYLGEQPVQHSALVLLSYIALHVPDSEELARAEILGVLEWASKQPNMTQHETIEALLQESKSRLELYQSRGSRGFQKLHQ 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02670 674 FunFam Armadillo repeat only 2 151 318 - -
Trre15g02670 674 Gene3D - 150 315 IPR011989 -
Trre15g02670 674 Gene3D - 3 122 IPR036537 GO:0007166
Trre15g02670 674 Gene3D - 415 660 IPR011989 -
Trre15g02670 674 SUPERFAMILY ARM repeat 153 642 IPR016024 -
Trre15g02670 674 PANTHER ARMADILLO REPEAT ONLY 4 1 666 - -
Trre15g02670 674 SMART arm_5 575 615 IPR000225 GO:0005515
Trre15g02670 674 SMART arm_5 219 259 IPR000225 GO:0005515
Trre15g02670 674 SMART arm_5 177 218 IPR000225 GO:0005515
Trre15g02670 674 SMART arm_5 441 481 IPR000225 GO:0005515
Trre15g02670 674 MobiDBLite consensus disorder prediction 386 405 - -
Trre15g02670 674 Pfam Armadillo/beta-catenin-like repeat 183 215 IPR000225 GO:0005515
Trre15g02670 674 FunFam Armadillo repeat only 4 2 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02670 Trre-Chr15 22505843 22507867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02670 147 281 U-box Gene Family AT3G46510 31.111 5.05e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02670 - - mtr:11440161 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02670 15 22505843 22507867 Trre9g01221 9 10064365 10066419 PCT