Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02667 ATGGCAGAAGAGAGATTCACCGGTGTTGTTCAATGGTTCAACAACAGCAAAGGCTTCGGATTCATCAAACCCGATGACGGTTCCGAAGATCTCTTCGTTCATCAATCTTCCATCAGATCCGATGGATTCCGCACTCTTGTTGAAGGCGATCTCGTCGAATTCGCCATCGCATCCGGTGATAACGACAAAACCAGAGCCGTCGATGTCACTGGCCCTAACGGCGCTCCTCTGCAATCCAAACAGGATTCCTACGGCGGAGGCGGTCGTGGATTTGGTGGTGGATTTAGAGGTTCTGATAGGCGTAATGGTGGCGGCGGCGGTGGTGGCTGTTACAACTGTGGTGATACTGGCCACATCGCTAGGGAATGCAACCGGATCAATAACTCCGGAGGTGGCGGTGGAGGCTCAGGCTGTTATAACTGCGGTGACACTGGCCACATCGCTAGGGATTGCAACCGAAGCAATAACTCCGGCGGAGGTGGAGGCGGCGCTTGTTATACATGCGGCGCGTTTGGACATATCGCTAGGGATTGCATGCGTGGAGGCAACATCGGTGGTGGAGTTGACCGTGGCAGCGGCGGTGGCACTTCATGCTACAGGTGTGGCGGAATTGGTCACATTGCAAGGGATTGTGCCACTCCAAGCAGCGGAAACAGCGGCGGCGGTTGCTATAAGTGCGGCGAGGTCGGTCACATAGCCAGGGATTGCAGCATTGAAGGTGGGAGATTTGATGGCGGTGGCAATGGAAGGTTTGATGGTGGCAACAGAAGGTTTGGTGGTGGCGGCGATGGAGGGAAGAACACATGCTTCAATTGTGGGAAGCCTGGACATTTTGCAAGGGAGTGCGTTGAGGCTTCTGGTTGA 864 0.5475 MAEERFTGVVQWFNNSKGFGFIKPDDGSEDLFVHQSSIRSDGFRTLVEGDLVEFAIASGDNDKTRAVDVTGPNGAPLQSKQDSYGGGGRGFGGGFRGSDRRNGGGGGGGCYNCGDTGHIARECNRINNSGGGGGGSGCYNCGDTGHIARDCNRSNNSGGGGGGACYTCGAFGHIARDCMRGGNIGGGVDRGSGGGTSCYRCGGIGHIARDCATPSSGNSGGGCYKCGEVGHIARDCSIEGGRFDGGGNGRFDGGNRRFGGGGDGGKNTCFNCGKPGHFARECVEASG 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02667 287 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Trre15g02667 287 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Trre15g02667 287 ProSiteProfiles Zinc finger CCHC-type profile. 198 211 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 ProSiteProfiles Zinc finger CCHC-type profile. 110 123 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 MobiDBLite consensus disorder prediction 72 100 - -
Trre15g02667 287 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Trre15g02667 287 SMART c2hcfinal6 109 125 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SMART c2hcfinal6 197 213 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SMART c2hcfinal6 222 238 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SMART c2hcfinal6 164 180 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SMART c2hcfinal6 268 284 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SMART c2hcfinal6 137 153 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 PANTHER COLD SHOCK DOMAIN PROTEIN 2 216 284 - -
Trre15g02667 287 Gene3D - 1 83 IPR012340 -
Trre15g02667 287 ProSiteProfiles Zinc finger CCHC-type profile. 138 151 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SMART csp_8 7 72 IPR011129 GO:0003676
Trre15g02667 287 ProSiteProfiles Zinc finger CCHC-type profile. 223 236 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SUPERFAMILY Retrovirus zinc finger-like domains 253 283 IPR036875 GO:0003676|GO:0008270
Trre15g02667 287 Gene3D - 261 287 - -
Trre15g02667 287 Gene3D - 99 133 - -
Trre15g02667 287 Gene3D - 135 185 - -
Trre15g02667 287 Gene3D - 194 243 - -
Trre15g02667 287 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Trre15g02667 287 SUPERFAMILY Retrovirus zinc finger-like domains 128 180 IPR036875 GO:0003676|GO:0008270
Trre15g02667 287 SUPERFAMILY Retrovirus zinc finger-like domains 93 126 IPR036875 GO:0003676|GO:0008270
Trre15g02667 287 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Trre15g02667 287 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Trre15g02667 287 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Trre15g02667 287 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Trre15g02667 287 ProSiteProfiles Zinc finger CCHC-type profile. 269 282 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 Pfam Zinc knuckle 109 123 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 Pfam Zinc knuckle 198 212 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 Pfam Zinc knuckle 267 282 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 Pfam Zinc knuckle 222 237 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 Pfam Zinc knuckle 164 179 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 Pfam Zinc knuckle 137 151 IPR001878 GO:0003676|GO:0008270
Trre15g02667 287 SUPERFAMILY Retrovirus zinc finger-like domains 191 238 IPR036875 GO:0003676|GO:0008270
Trre15g02667 287 ProSiteProfiles Zinc finger CCHC-type profile. 165 178 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02667 Trre-Chr15 22465834 22466697 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Trre15g02667 CSD 1.2e-24 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02667 K09250 - tpra:123881414 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02667 15 22465834 22466697 Trre15g02667 15 22465834 22466697 ECH