Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02649 ATGGGTTCTATTGGAATTCAAAGTTCAGAAACTGAAGTTGTCACCATTGATGTACTTGCAACCAAGTCTCTGATCGAAACCACCCATGTGTATCTTGATGTCAGAACGGTGGAAGAATTTCAGAAAGGGCATGTGGATGCAGAGAAGGTCATTAACATTGCATACATGTTTAATACACCTGAGGGGAGGGTGAAGAACCCAGAGTTTTTGAAGGAGGTTTCATCTCTTTGCAAGAAAGAAGATCACCTCATCGTGGGTTGTCAAAGTGGAGTGAGGTCTGTGTATGCAACTATTGATCTTCTTGCTGAAGGGTATAAGGATGTGTCCAACATGGGAGGAGGTTATTTGGATTGGGTTAAAAAGGAATTTCCTGTGAAGATAGTAAATGTGACCAAATAG 399 0.4135 MGSIGIQSSETEVVTIDVLATKSLIETTHVYLDVRTVEEFQKGHVDAEKVINIAYMFNTPEGRVKNPEFLKEVSSLCKKEDHLIVGCQSGVRSVYATIDLLAEGYKDVSNMGGGYLDWVKKEFPVKIVNVTK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02649 132 ProSiteProfiles Rhodanese domain profile. 29 127 IPR001763 -
Trre15g02649 132 CDD RHOD 30 119 - -
Trre15g02649 132 SMART rhod_4 16 124 IPR001763 -
Trre15g02649 132 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 13 125 IPR036873 -
Trre15g02649 132 Gene3D - 5 127 IPR036873 -
Trre15g02649 132 PANTHER THIOSULFATE SULFURTRANSFERASE 18 7 127 IPR044684 GO:0003824
Trre15g02649 132 Pfam Rhodanese-like domain 26 120 IPR001763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02649 Trre-Chr15 22314748 22316381 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02649 3 125 Sulfurtransferasese or Rhodanese AT5G66170 55.285 1.04e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02649 - K15692 gmx:100792251 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02649 15 22314748 22316381 Trre15g02649 15 22314748 22316381 ECH
Trre9g01236 9 10482640 10485008 Trre15g02649 15 22314748 22316381 PCT
Trre9g01331 9 11285579 11287937 Trre15g02649 15 22314748 22316381 PCT