Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02646 ATGACTGTTGCAAAGAATCAAGCAACTGAGATCTTGCCAACTGATGAGCCAGATGATGACTGTGTGATTATTCCAAATCCTGAAGGCTATCAACCTGTTGAAATGATTGCTGATGAAGAAGACGAGCACTCTGTTAGTGTTTCAAATTCTGGAGGTTGTTCTCAACCTGTTGATACATTTCTTGATGAAGAGGATGGCCATGATCAATCCCCTGCAGATTTTCTCACTGGTGCAATAAGAAAATTCCCTACATTCAATGATGATCGAAAGTTTGGTTGGAGGCTTACCATCAGTCATGCCTATGCTACTTCGACCAAGCGTCAAGTTTTGCATATTCCAGCGGATACTGTTAAGCATGTTCTTAAAAATAGGAAGAGTATTGTGATTAGAACTCCGCACAAGTTGGATGGGATCAAGTGCAACATAGTCACCTACAAAAGAAAACCAGGGAAGACAGAGATGTATCTTAGTAAGGGTTGGTTTGAGTTCATGAGAGCTAACAGATTGAGGGAGGGAGATGTATTACAATTTCAACTATCAGATCCGCCCGAAGCCGTGGCTGTGGACATTATTCGAGGAAGCAGTTGA 588 0.4184 MTVAKNQATEILPTDEPDDDCVIIPNPEGYQPVEMIADEEDEHSVSVSNSGGCSQPVDTFLDEEDGHDQSPADFLTGAIRKFPTFNDDRKFGWRLTISHAYATSTKRQVLHIPADTVKHVLKNRKSIVIRTPHKLDGIKCNIVTYKRKPGKTEMYLSKGWFEFMRANRLREGDVLQFQLSDPPEAVAVDIIRGSS 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02646 195 ProSiteProfiles B3 DNA-binding domain profile. 95 194 IPR003340 GO:0003677
Trre15g02646 195 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g02646 195 Gene3D - 78 194 IPR015300 -
Trre15g02646 195 SUPERFAMILY DNA-binding pseudobarrel domain 104 183 IPR015300 -
Trre15g02646 195 Pfam B3 DNA binding domain 105 192 IPR003340 GO:0003677
Trre15g02646 195 CDD B3_DNA 95 192 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02646 Trre-Chr15 22286087 22286758 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre15g02646 B3 1.2e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02646 - K24962 tpra:123886203 131.724