Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02607 ATGGCCGATTCACCCCCTCAACGAAGGAATTCAAGGTCCCCTTCACCTTCAGCATGGAAAGCTCAATCAAGATCAAGATCAAGATCAAGGTCTGTGCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGAAAGGTGGCCAATGCTACCAATCCTGGGAAAAGTTGCTTCATGTTTTCTTGTGGTGGAGCCACGTACCCGAATTTCATGTGGTTTTATTTTTGTTACAATGGATTCCCACGAGGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAACTGACTACATTGCATCAGTTATGTTGGCAACAATCAGAGATGACCAGTTCATATCCATGCAAATTTAGTGAAACTGCTTGA 417 0.4484 MADSPPQRRNSRSPSPSAWKAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERWPMLPILGKVASCFLVVEPRTRISCGFIFVTMDSHEDAERCIKYLNQSVLEGRYITVELTTLHQLCWQQSEMTSSYPCKFSETA 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02607 138 MobiDBLite consensus disorder prediction 1 26 - -
Trre15g02607 138 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 109 IPR000504 GO:0003723
Trre15g02607 138 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 116 IPR000504 GO:0003723
Trre15g02607 138 SUPERFAMILY RNA-binding domain, RBD 62 113 IPR035979 GO:0003676
Trre15g02607 138 MobiDBLite consensus disorder prediction 33 51 - -
Trre15g02607 138 MobiDBLite consensus disorder prediction 1 55 - -
Trre15g02607 138 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 62 113 - -
Trre15g02607 138 Gene3D - 60 129 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02607 Trre-Chr15 22036735 22038149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02607 18 115 Eukaryotic Initiation Factors Gene Family AT5G06000 30.612 1.71e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02607 K12897 - gmx:100800398 97.8265