Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02579 ATGGTTGATGATAAGAATGCATCTGCACATAATATGTTGTTGGGATTCATTGCAGGCATTTCGACAGTTATGGCATTGACCTTACTGTTCTGCCTTTTCTGGAAAAGGATTATTCCATTTCTTAAACAACCTAAGACTTTGAAAGGAAAGCAATTTAAAAGCTTGAAATATGACAAAATATCTTTAAGGTGTTTTAATCTTGAGGAACTAGAGAGAGCTACACAAAATTTTAGCCAAGATTGCTTATTGGGTTCTGGTGCATTTGGTAATGTCTACAAGGGAACTTTTGAGTTAGAGGGAATACTAGCCATAAAGAGATCTCATTCTGAATCATTCTTAAGTATGGAGGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCAGTAAAGCATAAGAATCTTATTGGTCTTGTTGGATATTGTGAGGAACCAGAACGAGATGGAGCAAAAATACTAGTTTATGAATATGTACCAAATGGTTCACTCTTGGAGTACATGATGGGAAATAGAAGGAGAAGCTTAACTTGGAAGCAAAGAATAAACATAGCAATAGGAGCAGCAAAAGGCGTAGCTTATTTGCATGAAGAGGTGAAACCAAGCATAATTCATCGTGACATAAAACCAAGTAACATACTATTAGGGGAATGTTTTGAGGCTAAGGTTTCAGATTTTGGGTTGGTAAAATCAGGGCCTACAGGTGATCAATCACATGTCAGTAGCCAAATCAAAGGGACACCAGGATACCTTGACCCTGCCTATTGTTCAAGCTCCCATTTGACCAAATTTAGTGATGTGTATAGCTTTGGTGTCATACTTTTGCAACTTATTTCAGCTAGACCTGCTGTGGATAGTGCTGAAAATCCAAGCAACCAACATATTATTGATTGGGCAAGACCTAGCATAGAGAAAGGTAACATTGAAGAAATCATGGATGCAAATTTATTTTGTGAAAGTGAGCCATGTGATATGAAAATTATGCTACAAATGGGGCAACTTGGTATAAGATGTGTGGCACAAGAACCAAAACATCGTCCCACAATGACTCAAGTTTGTAAAGAACTAGAGCAAGCCCTCTACTCAAATGATAGATTCACTAACAAGGATTCAGAAACCAATGGATCATTGGAACATTATGATTTTTCACAGAGCTATGTGAGCATAGATGGTGTTGGATTAGAGAAGTTCCATGTTGATATGGATAGCTTCTCCTTTAAGAGCACAAACCTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATTGACAAGAACAATTTGAGGAAAATATAA 1287 0.3683 MVDDKNASAHNMLLGFIAGISTVMALTLLFCLFWKRIIPFLKQPKTLKGKQFKSLKYDKISLRCFNLEELERATQNFSQDCLLGSGAFGNVYKGTFELEGILAIKRSHSESFLSMEEFRNEVRLLSAVKHKNLIGLVGYCEEPERDGAKILVYEYVPNGSLLEYMMGNRRRSLTWKQRINIAIGAAKGVAYLHEEVKPSIIHRDIKPSNILLGECFEAKVSDFGLVKSGPTGDQSHVSSQIKGTPGYLDPAYCSSSHLTKFSDVYSFGVILLQLISARPAVDSAENPSNQHIIDWARPSIEKGNIEEIMDANLFCESEPCDMKIMLQMGQLGIRCVAQEPKHRPTMTQVCKELEQALYSNDRFTNKDSETNGSLEHYDFSQSYVSIDGVGLEKFHVDMDSFSFKSTNLRCLENNSISIDIDKNNLRKI 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02579 428 FunFam Putative LRR receptor-like serine/threonine-protein kinase 46 155 - -
Trre15g02579 428 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 156 360 - -
Trre15g02579 428 Pfam Protein kinase domain 80 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02579 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Trre15g02579 428 CDD STKc_IRAK 83 355 - -
Trre15g02579 428 SMART serkin_6 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02579 428 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Trre15g02579 428 ProSiteProfiles Protein kinase domain profile. 77 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02579 428 SUPERFAMILY Protein kinase-like (PK-like) 58 354 IPR011009 -
Trre15g02579 428 Gene3D Transferase(Phosphotransferase) domain 1 156 379 - -
Trre15g02579 428 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Trre15g02579 428 PANTHER OS01G0750732 PROTEIN 53 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02579 Trre-Chr15 21729215 21732485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02579 13 375 Receptor kinase-like Gene Family AT1G51850 38.874 1.50e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Trre15g02579 Pkinase 8.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02579 - - gmx:106794267 660.988