Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02566 ATGGCCGATTCACCCCCTCAACGAAGGAATTCAAGGTCCCCTTCACCTTCAGCCTGGAGAGCTCAATCAAGATCAAGATCAAGATCGAGGTCTGTGCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGAAAGGGTGGCCAATGCTACCAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTCACCGAGAGGGACCTAGAGGATCATTTTAACAAAGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTTGAGCCACGTACCCGAATTTCACGTGGTTTTGCTTTTGTTACAATGGATTCCCACGAGGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGCTCTCGTGGTGACCATCGAGGTGATCGCGGTGATCGTGGTGACTTTCGCGGGGACCACCGTGTTGACTTTCGTGGTGACCATCGCGGTGACCATCGTGGTGATTTTCGTGGTGACCATCGTGGTGAGCGAGGAAGGTATCGTGGCGGTTCTGGTCGTGGCGATTACTCATATCGTAGGTCTCCAAGGCGTTCACCATACCGTGGAGGCCACGATCATTCACCACAGCACTCACCCTATGTTGGAAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCTCAGTCTCCTTATAGCCCAGAGAGGAGGTATGCTGGTGGATCTAGGTGA 810 0.5025 MADSPPQRRNSRSPSPSAWRAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERVANATNPGNTLYVTGLSSRVTERDLEDHFNKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGSRGDHRGDRGDRGDFRGDHRVDFRGDHRGDHRGDFRGDHRGERGRYRGGSGRGDYSYRRSPRRSPYRGGHDHSPQHSPYVGRSRRERSRSIPQSPYSPERRYAGGSR 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02566 269 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 141 IPR000504 GO:0003723
Trre15g02566 269 MobiDBLite consensus disorder prediction 139 269 - -
Trre15g02566 269 MobiDBLite consensus disorder prediction 218 232 - -
Trre15g02566 269 SUPERFAMILY RNA-binding domain, RBD 56 171 IPR035979 GO:0003676
Trre15g02566 269 MobiDBLite consensus disorder prediction 33 51 - -
Trre15g02566 269 MobiDBLite consensus disorder prediction 1 66 - -
Trre15g02566 269 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 48 262 - -
Trre15g02566 269 SMART rrm1_1 64 137 IPR000504 GO:0003723
Trre15g02566 269 MobiDBLite consensus disorder prediction 1 26 - -
Trre15g02566 269 CDD RRM_SF 65 137 - -
Trre15g02566 269 MobiDBLite consensus disorder prediction 160 211 - -
Trre15g02566 269 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 134 IPR000504 GO:0003723
Trre15g02566 269 Gene3D - 3 147 IPR012677 -
Trre15g02566 269 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 147 - -
Trre15g02566 269 MobiDBLite consensus disorder prediction 52 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02566 Trre-Chr15 21568476 21570947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02566 60 125 Eukaryotic Initiation Factors Gene Family AT3G11400 40.909 6.10e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02566 K12897 - zju:107408932 202.216