Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre15g02566 | ATGGCCGATTCACCCCCTCAACGAAGGAATTCAAGGTCCCCTTCACCTTCAGCCTGGAGAGCTCAATCAAGATCAAGATCAAGATCGAGGTCTGTGCCAAGACAAAGGCCAAGATCCGACTCCAGAGGCCGTGGCAGATCAAGGTCTCGAAGTCCTGAAAGGGTGGCCAATGCTACCAATCCTGGTAATACACTTTATGTTACTGGTCTATCTTCAAGGGTCACCGAGAGGGACCTAGAGGATCATTTTAACAAAGAGGGAAAAGTTGCTTCATGTTTTCTTGTGGTTGAGCCACGTACCCGAATTTCACGTGGTTTTGCTTTTGTTACAATGGATTCCCACGAGGATGCTGAACGCTGTATCAAGTATCTCAATCAATCAGTTTTAGAGGGTCGTTACATCACTGTAGAACGGTCAAGAAGAAAGCGTGCAAGAACTCCAACACCAGGGCACTATCTTGGGCTGAAAAATACTAGAGACTATGGCTCTCGTGGTGACCATCGAGGTGATCGCGGTGATCGTGGTGACTTTCGCGGGGACCACCGTGTTGACTTTCGTGGTGACCATCGCGGTGACCATCGTGGTGATTTTCGTGGTGACCATCGTGGTGAGCGAGGAAGGTATCGTGGCGGTTCTGGTCGTGGCGATTACTCATATCGTAGGTCTCCAAGGCGTTCACCATACCGTGGAGGCCACGATCATTCACCACAGCACTCACCCTATGTTGGAAGGTCTAGGAGGGAGAGATCTAGGTCCATTCCTCAGTCTCCTTATAGCCCAGAGAGGAGGTATGCTGGTGGATCTAGGTGA | 810 | 0.5025 | MADSPPQRRNSRSPSPSAWRAQSRSRSRSRSVPRQRPRSDSRGRGRSRSRSPERVANATNPGNTLYVTGLSSRVTERDLEDHFNKEGKVASCFLVVEPRTRISRGFAFVTMDSHEDAERCIKYLNQSVLEGRYITVERSRRKRARTPTPGHYLGLKNTRDYGSRGDHRGDRGDRGDFRGDHRVDFRGDHRGDHRGDFRGDHRGERGRYRGGSGRGDYSYRRSPRRSPYRGGHDHSPQHSPYVGRSRRERSRSIPQSPYSPERRYAGGSR | 269 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre15g02566 | 269 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 63 | 141 | IPR000504 | GO:0003723 | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 139 | 269 | - | - | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 218 | 232 | - | - | |
Trre15g02566 | 269 | SUPERFAMILY | RNA-binding domain, RBD | 56 | 171 | IPR035979 | GO:0003676 | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 33 | 51 | - | - | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 1 | 66 | - | - | |
Trre15g02566 | 269 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 48 | 262 | - | - | |
Trre15g02566 | 269 | SMART | rrm1_1 | 64 | 137 | IPR000504 | GO:0003723 | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Trre15g02566 | 269 | CDD | RRM_SF | 65 | 137 | - | - | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 160 | 211 | - | - | |
Trre15g02566 | 269 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 65 | 134 | IPR000504 | GO:0003723 | |
Trre15g02566 | 269 | Gene3D | - | 3 | 147 | IPR012677 | - | |
Trre15g02566 | 269 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 3 | 147 | - | - | |
Trre15g02566 | 269 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre15g02566 | Trre-Chr15 | 21568476 | 21570947 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre15g02566 | 60 | 125 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 40.909 | 6.10e-08 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre15g02566 | K12897 | - | zju:107408932 | 202.216 |