Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02563 ATGAATTTTAATTCTTCTAAGTATACTTCCCTTTTTCCTGAATCACTTTTACCAGACAATCAATCACCTGATTGGAACAACAAAGCAGACAATGCATGGCAACTAACAGCAGCAACATTAGTGGGCCTACAAACTGTTCCTGGGCTTGTAATACTTTATGGCAGCATGGTTAAGAAAAAATGGGCCGTAAATTCAGCCTTCATGGGCTTATATGCATTTTCAGCTGTGTTAGTTTGTTGGGTTTTATGGGCCCATCAAATGGCATTTGGAAACAAGCTTTTGCCTTTTGTTGGAAAGCCCAATTTTGCTTTGACTCAAAAGTTTCTACTTTCAAAGGCATCAACACAATATTATTTACCAATGGCTGATTTTGTTTTCTATCAATTTGCTTTTGCTGCAATTACTATTGTGTTGCTTGCAGGATCTTTGCTTGGGAGAATGAATTTTTTTGCATGGATGTTGTTTGTTCCTATGTGGCTTACATTTTCTTATACCATTGGTGCTTTCACTATATGGGGTAATGGATTCCTTGAAGGGAAAATAATTGATTATGCTGGTGGATTTGTAATTCATTTATCCTCTGGTGTTGCTGGTTTTACAGCTGCTTATTGGGTTGGTCCAAGAAGTTCAGATGATAGGAAAAATTTCCCACCAAATAACATAATTCACATGCTTGGAGGTGCAGGGTTGTTATGGATGGGTTGGACAGGGTTTAATGGTGGAGCACCATTTAAAGTGGGAGAGGTTACATCCTTAGCAATATTCAATACTCATTTGTGCACTGCCACAAGCATTCTTGTTTGGATTTCTCTAGATATGATTGTATACAAGAAGGGATCATTGATAGGTTCTGTCCAAGGAATGATGACTGGCCTTGTTTGCATCACACCAGGTGCAGGATTGGTGGATCCATGGGCAGCAATATTGATGGGAGCTTTGTCAGGTTCAATTCCATGGTACACAATGATGGTGTTGCACAAAAGACTACCATTTTTTCAAAATGTAGATGATACATTAGGAGTTTTCCACACTCATGCAGTTGCTGGTATTCTTGGGGGTATCCTTTCTGGTGTCTTTGCCAAGCCCAAACTTTTAAGGATGCTTTATGGGCCTAAAACTTCTTATGGGCCTGGCTTATTTTATAGTTATTTTGATGATGATATAAGCCTAGGAATTAGGCAAATATTGTACCAATTACTAGGAGCAATTTTTATTACTATTTGGAATGTTGTTATTACTAGTCTCATTTGTATTATTCTAAGTAACATTGTGGACCTTCGAATGCATGAAGAAGACCTTGAAGTTGGTGATGATGCTGCTCATGGAGAAGAAGCTTATGTATTATGGGGTGATGGAGAAAGCATGATACTCCCACTTCGTACTCCAACAATTCTTTCCATTTCTCACCAAAGACATTCAATTCCTATCAATAAAATTGACGAATAA 1446 0.3804 MNFNSSKYTSLFPESLLPDNQSPDWNNKADNAWQLTAATLVGLQTVPGLVILYGSMVKKKWAVNSAFMGLYAFSAVLVCWVLWAHQMAFGNKLLPFVGKPNFALTQKFLLSKASTQYYLPMADFVFYQFAFAAITIVLLAGSLLGRMNFFAWMLFVPMWLTFSYTIGAFTIWGNGFLEGKIIDYAGGFVIHLSSGVAGFTAAYWVGPRSSDDRKNFPPNNIIHMLGGAGLLWMGWTGFNGGAPFKVGEVTSLAIFNTHLCTATSILVWISLDMIVYKKGSLIGSVQGMMTGLVCITPGAGLVDPWAAILMGALSGSIPWYTMMVLHKRLPFFQNVDDTLGVFHTHAVAGILGGILSGVFAKPKLLRMLYGPKTSYGPGLFYSYFDDDISLGIRQILYQLLGAIFITIWNVVITSLICIILSNIVDLRMHEEDLEVGDDAAHGEEAYVLWGDGESMILPLRTPTILSISHQRHSIPINKIDE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02563 481 Gene3D Ammonium transporter AmtB like domains 13 449 IPR029020 -
Trre15g02563 481 FunFam Ammonium transporter 15 449 - -
Trre15g02563 481 Pfam Ammonium Transporter Family 32 446 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre15g02563 481 PRINTS Rhesus blood group protein signature 346 362 IPR002229 GO:0005886
Trre15g02563 481 PRINTS Rhesus blood group protein signature 128 144 IPR002229 GO:0005886
Trre15g02563 481 PRINTS Rhesus blood group protein signature 222 240 IPR002229 GO:0005886
Trre15g02563 481 PRINTS Rhesus blood group protein signature 253 275 IPR002229 GO:0005886
Trre15g02563 481 NCBIfam ammonium transporter 30 446 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre15g02563 481 SUPERFAMILY Ammonium transporter 25 427 - -
Trre15g02563 481 ProSitePatterns Ammonium transporters signature. 183 208 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre15g02563 481 PANTHER AMMONIUM TRANSPORTER MEP2 15 454 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02563 Trre-Chr15 21531132 21533742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02563 121 454 Inorganic Solute Cotransporters AT2G38290 58.631 8.45e-133 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g01976 7 15662867 15667473 Trre15g02563 15 21531132 21533742 PCT