Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02562 ATGGGCGTATCCAAAAAATGGTTAAGAATCGTTAGAACAAAATTCCTAAGATCATCCAACAAAGACATAACTCTCCCTCCTCGTACAATTGTTTGCACAAATCAAACCCAACAAGCCATACATGGAAATGAATCAATCATTACCACCGCCAAGGAAGATTTTATCATTTTGCAACCATCCACTATTAATTCTTCATCAACCACATTATTCACTATGGAAGACTTTGCAGCAATTAAGATTCAAGCTTATTTCAGGGGTCATCTTGCAAGACGAGCACAAAGAGCATTGAAAAGCCTAGTGAAATTGCAAGCATTGGTTCGTGGGGTGTGTGTGAGGAGACAATCGCGTATCGCAATGCAATGTATGCATGCGCTTGTTCGATTACAAGTCAAGGTTCGTGCAAGACAGTTACTCGGTACCTTTGATCACACTCAATAA 438 0.3995 MGVSKKWLRIVRTKFLRSSNKDITLPPRTIVCTNQTQQAIHGNESIITTAKEDFIILQPSTINSSSTTLFTMEDFAAIKIQAYFRGHLARRAQRALKSLVKLQALVRGVCVRRQSRIAMQCMHALVRLQVKVRARQLLGTFDHTQ 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02562 145 ProSiteProfiles IQ motif profile. 97 124 IPR000048 GO:0005515
Trre15g02562 145 Pfam IQ calmodulin-binding motif 76 92 IPR000048 GO:0005515
Trre15g02562 145 SMART iq_5 72 94 IPR000048 GO:0005515
Trre15g02562 145 SMART iq_5 95 116 IPR000048 GO:0005515
Trre15g02562 145 Gene3D - 73 124 - -
Trre15g02562 145 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 117 IPR027417 -
Trre15g02562 145 ProSiteProfiles IQ motif profile. 73 101 IPR000048 GO:0005515
Trre15g02562 145 PANTHER IQ-DOMAIN 5-RELATED 12 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02562 Trre-Chr15 21510745 21511626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02562 61 139 IQD Protein Family AT3G51380 72.152 1.42e-32 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02562 - - cam:101507643 197.208