Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02532 ATGGTTATTTCTTCTGATGAGAACAACTCCAATGCAACGATGCCCAAAAATTTTCAAGGAGGAATGGATCAAAATGGTGTTGGTGGTGGAAGAATGGTTAGGAAGAACAACAGAAGAACTTTGAGTGAGATCAATCAAAATTTAGTGCAAGGAAGGCCTTACCCTTGTGTTGTTAACAAGAGGGTGTTGATGTCTGATAAACATGAGATTTGTGAAAAGAAACAGGCTGATCTGGGACATCGACCCATCACAAGGAGGTTTGCTACAAAAATTGCTGATTCACAACAATCTTATGTTGAGAAACCTAAGAATTCAAATCCATTGATTTCGAATGAGTTTGGAAATGCAATTGCAATTGATGATGAGCACAAATCACCAACAGACCAACCAATGCCTATGACTTTAGAATCAACAGACCCAATGCACACTGATTCACACGAGATGGAGGAAGTTGAGATGGAGGATATTAATGAAGAGATGATTTTGGACATTGATAGCAATGATGCAAATAATTCCCTTGCTGTTGTGGAATATATTGAAGATCTTCATTCTTACTACAGACAAGTTGAGTTTATTGGTTGTGTTTCACCACACTATATGGCAGAACAAGCTGACCTTAATGAGAGGATGAGGGCTATACTAGTTGATTGGCTCATTGAGGTGCATGACAAATTTGGTCTCATGCAGGAGACATTGTTTCTTACAATTAATCTCATAGACAGATTTTTGGCTAAGCAACATGTTGTAAGAAAGAAACTTCAGCTGGTTGGTCTTGTTGCCATGCTTTTGGCATGCAAGTATGAGGAGGTTGATGTTTTCGTTGTTTGGGATCTAATCCACTTATCTGATAACGCTTACACAAGGAAGGATGTTCTCGATATGGAGAAATTGATGCTGAACACATTGCAGTATAACATGTCTCTCCCAACTGCATATGTTTTTATCAGAAGATTTCTGAAGGCTGCTCAAGCTGACAAAAAACTTGAGCAGGTAGCTTTTTTCCTGGTGGAGCTATCTCTGGTGGAATATGAGATGTTGAAGTTTCCACCATCCTTGATGGCTGCTGCTGCTGTGTACACTGCTCAATGCACTGTTAGTGGTTTCAAAAATTGGAATAAGACTTGTGAATGGCACACAAACTACTCTGAAGATCAGTTGTTGGAGTGCTCAATGAAGATGGTTGGATTCCACCAAAAAGCTGGAATTGGGAAGCTGACAGGAGTATACAGGAAGTATGGCTCGGCAAAATTTAGCTTCGCAGCAAAATGTGATCCAGCATGTTTTCTTTTGGAGAACAAGAACCAGTCATAA 1311 0.3966 MVISSDENNSNATMPKNFQGGMDQNGVGGGRMVRKNNRRTLSEINQNLVQGRPYPCVVNKRVLMSDKHEICEKKQADLGHRPITRRFATKIADSQQSYVEKPKNSNPLISNEFGNAIAIDDEHKSPTDQPMPMTLESTDPMHTDSHEMEEVEMEDINEEMILDIDSNDANNSLAVVEYIEDLHSYYRQVEFIGCVSPHYMAEQADLNERMRAILVDWLIEVHDKFGLMQETLFLTINLIDRFLAKQHVVRKKLQLVGLVAMLLACKYEEVDVFVVWDLIHLSDNAYTRKDVLDMEKLMLNTLQYNMSLPTAYVFIRRFLKAAQADKKLEQVAFFLVELSLVEYEMLKFPPSLMAAAAVYTAQCTVSGFKNWNKTCEWHTNYSEDQLLECSMKMVGFHQKAGIGKLTGVYRKYGSAKFSFAAKCDPACFLLENKNQS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02532 436 Pfam Cyclin, N-terminal domain 182 307 IPR006671 -
Trre15g02532 436 SUPERFAMILY Cyclin-like 309 423 IPR036915 -
Trre15g02532 436 Gene3D - 195 307 - -
Trre15g02532 436 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g02532 436 SUPERFAMILY Cyclin-like 170 306 IPR036915 -
Trre15g02532 436 Gene3D - 181 421 - -
Trre15g02532 436 SMART cyclin_7 313 395 IPR013763 -
Trre15g02532 436 SMART cyclin_7 216 300 IPR013763 -
Trre15g02532 436 FunFam G2/mitotic-specific cyclin-1 293 421 - -
Trre15g02532 436 SMART Cyclin_C_2 309 426 IPR004367 -
Trre15g02532 436 PANTHER CYCLINS 144 411 IPR039361 -
Trre15g02532 436 MobiDBLite consensus disorder prediction 1 26 - -
Trre15g02532 436 PIRSF Cyclin_A_B_D_E 2 436 IPR046965 GO:0016538|GO:0044772
Trre15g02532 436 Pfam Cyclin, C-terminal domain 309 424 IPR004367 -
Trre15g02532 436 CDD CYCLIN_AtCycB-like_rpt1 158 304 - -
Trre15g02532 436 CDD CYCLIN_AtCycB-like_rpt2 309 425 - -
Trre15g02532 436 ProSitePatterns Cyclins signature. 211 242 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02532 Trre-Chr15 21255255 21259064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02532 2 430 Core Cell Cycle Gene Families AT1G20610 53.776 6.79e-160 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02532 K21777 - gmx:100798068 583.948