Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02526 ATGGGAGGTGACGGCGTCGTTGAAGATTCTGCTTCGGAATCGAAGACCGAACTTGAAGCTGTTAACATCAACGTTCGATGCTCTAACGGTTCAAAGTATTCCGTTCGTGTTTCTCTCGATTCAACTGTTGGATCCTTCAAGGATCTCATTGCTCGTAACTGTGATATCCCCGCACAACAACAACGCCTCATTTACAAGGGTCGTATATTGAAGGACGATCAAACTCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGTACCTACCAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACAACGAATGATGCCGCAGGTGCTGGAGCTAGAGCTAATGATGGTGGGGGTTTAGGAGGGCTCGGTCTTGGAGGAGCTTCACTGTTTCCTGGACTTGGTACTAATGGCACTGGGGGGAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCTAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATTTAGTAAGTAATCCTGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTAATGGATCGTAACCCTGAGTTAGCACACATACTTAATGATCCAAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGAGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGCCGGGAATACAGGAATTTCAGCCACTCGGGATCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGTTCTCCCATACCCAATGCTAACCCACTTCCTAATCCATGGTCCTCTACAGGAACTGGAGTTCCCCAAACTAACACCAGAAGATCAACCACTGGTGGGGATGCTAGACAGCAACCACCTACTGGCTTAGGAGGTCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTGACCCAAATGATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCGCAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAGCAACGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCCGAGTTTCTACGTTTGTTTTCATCACCTGAGACATTGCAGCAACTCATGTCTTTCCAACAAGCCCTTCTGTCTCAGCAACAATCAGGACGGGAATCGGGTCAAACTGGTGGAGGGACTGGTACAGGGACTGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATATATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTACACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTCATTGCCACTTCAGGGAATGTTCATGCAGCAGTTGAACGTCTTTTGGGGAACTCTGGTCAGTAG 1623 0.4621 MGGDGVVEDSASESKTELEAVNINVRCSNGSKYSVRVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFVPTNASGGTNSSGTNTTTNDAAGAGARANDGGGLGGLGLGGASLFPGLGTNGTGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAAGNTGISATRDQSTNPSTTSSETTAGSPIPNANPLPNPWSSTGTGVPQTNTRRSTTGGDARQQPPTGLGGLGLPGLEGMLGGSGMPDPALLTQMMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQQSGRESGQTGGGTGTGTGPFNNMGLEMLSSMFGGLGAGSLAVPNISNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02526 540 CDD UBA_PLICs 498 536 - -
Trre15g02526 540 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Trre15g02526 540 MobiDBLite consensus disorder prediction 440 464 - -
Trre15g02526 540 SUPERFAMILY UBA-like 494 536 IPR009060 GO:0005515
Trre15g02526 540 Gene3D - 8 106 - -
Trre15g02526 540 Gene3D - 193 252 - -
Trre15g02526 540 Gene3D - 480 540 - -
Trre15g02526 540 Pfam UBA/TS-N domain 498 534 IPR015940 -
Trre15g02526 540 SMART CBM 398 433 IPR006636 -
Trre15g02526 540 SMART CBM 145 186 IPR006636 -
Trre15g02526 540 SMART CBM 341 394 IPR006636 -
Trre15g02526 540 SMART CBM 199 238 IPR006636 -
Trre15g02526 540 MobiDBLite consensus disorder prediction 282 350 - -
Trre15g02526 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 492 537 IPR015940 -
Trre15g02526 540 MobiDBLite consensus disorder prediction 97 116 - -
Trre15g02526 540 PANTHER UBIQUILIN 17 535 IPR015496 -
Trre15g02526 540 SMART uba_6 498 536 IPR015940 -
Trre15g02526 540 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Trre15g02526 540 SMART ubq_7 21 92 IPR000626 GO:0005515
Trre15g02526 540 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Trre15g02526 540 MobiDBLite consensus disorder prediction 97 117 - -
Trre15g02526 540 MobiDBLite consensus disorder prediction 282 339 - -
Trre15g02526 540 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
Trre15g02526 540 CDD Ubl_Dsk2p_like 21 93 - -
Trre15g02526 540 FunFam Ubiquitin domain-containing protein DSK2b 481 539 - -
Trre15g02526 540 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02526 Trre-Chr15 21194260 21199040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02526 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 3.21e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02526 K04523 - gmx:100776447 738.028