Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02525 ATGGGAGGTGACGGCGTCGTTGAAGATTCTGCTTCGGAATCGAAGACCGAACTTGAAGCTGTTAACATCAACGTTCGATGCTCTAACGGTTCAAAGTATTCCGTTCGTGTTTCTCTCGATTCAACTGTTGGATCCTTCAAGGATCTCATTGCTCGTAACTGTGATATCCCCGCACAACAACAACGCCTCATTTACAAGGGTCGTATATTGAAGGACGATCAAACTCTTCAAAGCTATGGTTTGGAGGCAGATCATGCTGTCCATTTGGTTCGTAGCTTTGTACCTACCAATGCGAGTGGTGGGACCAATAGTAGTGGCACCAATACCACAACGAATGATGCCGCAGGTGCTGGAGCTAGAGCTAATGATGGTGGGGGTTTAGGAGGGCTCGGTCTTGGAGGAGCTTCACTGTTTCCTGGACTTGGTACTAATGGCACTGGGGGGAATGGCTTATTTGGCGAGGGATTTCCAGATCTTGAACAAATGCAGCAACCATTTATTTCAAACCCTAATTTAATGAGAGAAATGATGAATTCACCTGCTATGCAGAATTTAGTAAGTAATCCTGAGATAGTGCGGAATCTTATAATGAACAACCCACAGATGCAAGAGCTAATGGATCGTAACCCTGAGTTAGCACACATACTTAATGATCCAAGCACTCTCCGCCAGACCCTTGAAGCTACAAGGAACCCTGAGATCATGCGAGAAATGATGAGAAATACAGACAGGGCAATGAGCAACATTGAATCTTCTCCCGAGGGATTCAACATGTTGAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACTACAATGGCCGCCGGGAATACAGGAATTTCAGCCACTCGGGATCAATCAACTAATCCCTCAACCACTAGTTCTGAAACAACTGCTGGTTCTCCCATACCCAATGCTAACCCACTTCCTAATCCATGGTCCTCTACAGGAACTGGAGTTCCCCAAACTAACACCAGAAGATCAACCACTGGTGGGGATGCTAGACAGCAACCACCTACTGGCTTAGGAGGTCTTGGTTTGCCTGGCCTTGAAGGCATGCTGGGTGGCAGTGGTATGCCAGATCCTGCTTTATTGACCCAAATGATGCAAAATCCAGCTATCTCACAAATGATGCAAAGTATGCTTTCCAACCCGCAAACTTTGAGTCAGATTCTTGGTGCTGCTAATACTGAGCAACGTGGCATGCCTGATTTAAATTCTCTTAGAGATGTGATGCAAAATCCCGAGTTTCTACGTTTGTTTTCATCACCTGAGACATTGCAGCAACTCATGTCTTTCCAACAAGCCCTTCTGTCTCAGCAACAATCAGGACGGGAATCGGGTCAAACTGGTGGAGGGACTGGACCATTTAACAACATGGGGTTGGAGATGTTATCCAGCATGTTTGGTGGACTTGGAGCTGGTAGCCTAGCTGTTCCAAATATATCAAATGAGCCACCGGAGCAATTGTATGCCACCCAGCTTACACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTCATTGCCACTTCAGGGAATGTTCATGCAGCAGTTGAACGTCTTTTGGGGAACTCTGGTCAGTAG 1611 0.4612 MGGDGVVEDSASESKTELEAVNINVRCSNGSKYSVRVSLDSTVGSFKDLIARNCDIPAQQQRLIYKGRILKDDQTLQSYGLEADHAVHLVRSFVPTNASGGTNSSGTNTTTNDAAGAGARANDGGGLGGLGLGGASLFPGLGTNGTGGNGLFGEGFPDLEQMQQPFISNPNLMREMMNSPAMQNLVSNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAAGNTGISATRDQSTNPSTTSSETTAGSPIPNANPLPNPWSSTGTGVPQTNTRRSTTGGDARQQPPTGLGGLGLPGLEGMLGGSGMPDPALLTQMMQNPAISQMMQSMLSNPQTLSQILGAANTEQRGMPDLNSLRDVMQNPEFLRLFSSPETLQQLMSFQQALLSQQQSGRESGQTGGGTGPFNNMGLEMLSSMFGGLGAGSLAVPNISNEPPEQLYATQLTQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSGQ 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02525 536 CDD UBA_PLICs 494 532 - -
Trre15g02525 536 SMART CBM 398 433 IPR006636 -
Trre15g02525 536 SMART CBM 341 394 IPR006636 -
Trre15g02525 536 SMART CBM 145 186 IPR006636 -
Trre15g02525 536 SMART CBM 199 238 IPR006636 -
Trre15g02525 536 MobiDBLite consensus disorder prediction 282 350 - -
Trre15g02525 536 FunFam Ubiquitin domain-containing protein DSK2b 196 252 - -
Trre15g02525 536 FunFam Ubiquitin domain-containing protein DSK2b 18 104 - -
Trre15g02525 536 FunFam Ubiquitin domain-containing protein DSK2b 477 535 - -
Trre15g02525 536 Gene3D - 476 536 - -
Trre15g02525 536 MobiDBLite consensus disorder prediction 97 116 - -
Trre15g02525 536 SUPERFAMILY UBA-like 490 532 IPR009060 GO:0005515
Trre15g02525 536 Pfam UBA/TS-N domain 494 530 IPR015940 -
Trre15g02525 536 Gene3D - 8 106 - -
Trre15g02525 536 Pfam Ubiquitin family 23 92 IPR000626 GO:0005515
Trre15g02525 536 SMART ubq_7 21 92 IPR000626 GO:0005515
Trre15g02525 536 Gene3D - 193 252 - -
Trre15g02525 536 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 488 533 IPR015940 -
Trre15g02525 536 MobiDBLite consensus disorder prediction 97 117 - -
Trre15g02525 536 SMART uba_6 494 532 IPR015940 -
Trre15g02525 536 MobiDBLite consensus disorder prediction 282 339 - -
Trre15g02525 536 SUPERFAMILY Ubiquitin-like 15 108 IPR029071 -
Trre15g02525 536 CDD Ubl_Dsk2p_like 21 93 - -
Trre15g02525 536 PANTHER UBIQUILIN 17 531 IPR015496 -
Trre15g02525 536 ProSiteProfiles Ubiquitin domain profile. 21 90 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02525 Trre-Chr15 21194260 21199040 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02525 21 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.857 3.38e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02525 K04523 - gmx:100776447 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02525 15 21194260 21199040 Trre15g02525 15 21194260 21199040 ECH
Trre9g01366 9 11651151 11655918 Trre15g02525 15 21194260 21199040 PCT