Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02524 ATGGAAAACAATAAAAATGGTTCCTCTAAACCTATGTTACAATGTAATGACCCCCAGAGTGATGGTGCCACAGATATTGGTCCTACTACTGGAGAGGGTACAAGTACAAGGAATATTAAAATGTTGCCTGTGAGTTATTCAGATTTGGATTCTGGCTGTTTGGGTCCCCTTAAGAGAGAAATTGGAATTATTATCAACAATCAGAAAATAAAATGCTGTGAAGATGAAAAAGACGATGCATCCAAATTGAAGGACGTTGTTGAATGTGTAAAAATCAACGTTCGTTACTTCAACGGTTCAAAATTTTCCGTTCAAGTTGCACTCGAATCCACAGTTGAGTCCTTTAAGGAGCTTATCGTTGGAAACAGTGGCATTCCCATTCAAAATCAGCGACTCTTTTACAAAGGCAAAATCTTGCAGAATGATCAATCCCTTCAAAGCTATGGTTTGGGGGCAAATCATACTGTCCATCTGGTTCATTGCTTTGCACCCACCGATACTGATGATGGGATCGGCAATAGTGACACCGGTACCATGACATATGATGTTGCTGATGCTGAGTGGGATGATGAATTACTTCGAGAAGAGCTGCCACCACATCTCGTTAATCCTGACATAATGTGGGTTATGTTAACAGACAACGAAGAACTACCACCAAACGGGGTTATTGATCCCAACATTGTGAGCCAGGTTCTTGAAGCTGCAAGGAACCCTGCGATCATGCACGAAATGACGAGACTATCCGATCTCGAACTGAACAACATTGTATCTTCTCCCAATGGATTCAACATGTTGAGGCACATTTATGAAGAAATTCAAGAACCAAATGCCAGTATAGTGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTATGACGGCAATGCCAGCTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCATTTACAGAACCAAATGCCAGTATAGTGGCTGGTAATGGTATTACAGGAATTTCCGGGACTTATGATGGCAATGCAAGTTCTTCCTTACCCAATACTACCCCACTTCCCAATCCTTGGGCTCCACTTCCCAATCCTTGGGCTTCACTTCCCAATCTTTGGGCTCCAATTCCCAATTTTTGGGGTTTTATTGAAAATGACTGGGATTATAACGGAAGGTCAACCACTGGTTTTTCGGCCGTCGAAGGCATATTGGATGGCAGTTTTATGCCAAATGATGCTTTGCAAGATCCACCTACGCCAGAATTCATAGAATTTATACCTTCCAACGAAGAAGCGTTGTGCCAGTTTGATGGTCGTAATATTGAACAACATGGCATGCCTGATTTAAGTTCCCTCAGAGAAGAGATTCAAAATCCGGAGTATCTTAGTTTGTCTTTTCAACCTGAGACATTGCAGCAACCATTGTCTTTCTCGGAAGAAGATCTTCCACCTGAGCTTAGTCAGCAACAATCAGTGCAGGAACCGGATCAGACAACTGGAGACACTGTCACAGCAGAGCAATTGTATGCCTGCCAACTTTCACACCTTCAACAGATGGGATTCAATGATAGAGAAGAAAACATCAGAGCTCTTATTCTCACTTCAGGGGATATTCTTGCAGCAATTCGACATCTTTGGTGGCTCTTACATCAGTAG 1629 0.426 MENNKNGSSKPMLQCNDPQSDGATDIGPTTGEGTSTRNIKMLPVSYSDLDSGCLGPLKREIGIIINNQKIKCCEDEKDDASKLKDVVECVKINVRYFNGSKFSVQVALESTVESFKELIVGNSGIPIQNQRLFYKGKILQNDQSLQSYGLGANHTVHLVHCFAPTDTDDGIGNSDTGTMTYDVADAEWDDELLREELPPHLVNPDIMWVMLTDNEELPPNGVIDPNIVSQVLEAARNPAIMHEMTRLSDLELNNIVSSPNGFNMLRHIYEEIQEPNASIVAGNGITGISGTYDGNASSSLPNTTPLPNPWAFTEPNASIVAGNGITGISGTYDGNASSSLPNTTPLPNPWAPLPNPWASLPNLWAPIPNFWGFIENDWDYNGRSTTGFSAVEGILDGSFMPNDALQDPPTPEFIEFIPSNEEALCQFDGRNIEQHGMPDLSSLREEIQNPEYLSLSFQPETLQQPLSFSEEDLPPELSQQQSVQEPDQTTGDTVTAEQLYACQLSHLQQMGFNDREENIRALILTSGDILAAIRHLWWLLHQ 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02524 542 CDD Ubl_Dsk2p_like 90 159 - -
Trre15g02524 542 SUPERFAMILY Ubiquitin-like 89 172 IPR029071 -
Trre15g02524 542 MobiDBLite consensus disorder prediction 1 36 - -
Trre15g02524 542 ProSiteProfiles Ubiquitin domain profile. 90 159 IPR000626 GO:0005515
Trre15g02524 542 MobiDBLite consensus disorder prediction 469 493 - -
Trre15g02524 542 SUPERFAMILY UBA-like 496 537 IPR009060 GO:0005515
Trre15g02524 542 Gene3D - 479 538 - -
Trre15g02524 542 PANTHER UBIQUILIN 331 536 IPR015496 -
Trre15g02524 542 Gene3D - 73 169 - -
Trre15g02524 542 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 494 536 IPR015940 -
Trre15g02524 542 SMART ubq_7 90 161 IPR000626 GO:0005515
Trre15g02524 542 Pfam Ubiquitin family 92 159 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02524 Trre-Chr15 21184690 21191086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02524 90 159 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 1.16e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02524 K04523 - gmx:100797539 268.855