Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02521 ATGGGTCTCTGTTTTTCCTTTCTCTTTCCTCCCTCTGCACCTCCCCAATCCTCTTCTTCCTTCAACAAACCTCCACTTTCTTCAGGTTCAACAAGCACTATTGGATTCTCTGCAACAACAAGCAGTGCAGGAAGAAGCCAATTCTCTGAGGTAACAAGTGGAAGCATAGATGGTACTACTGAAGGGTCTCTTCGTTTTGCTTCACCAAATGGTCAAATTCTTGAAAGACCAAATTTGAAGGTTTTTAGTTTTGGTGATATGAAATCTGCTACAAGAGGGTTCAAACCTGATACATTACTTGGTGAAGGTGGTTTTGGAAAAGTTTATAAAGGTTGGTTAGATGAGAAAACTCTTACTCCTGCTAAAGCTGGTTCTGGAGTTATGGTTGCCATTAAAAAATTGAACTCTGAAAGTACTCAAGGTTTTCAAGAATGGCAGTCTGAAGTCAATTTCTTAGGAAGACTTTCTCACCCAAACTTGGTGAAGCTATTGGGTTACTGTTGGGAAGATGAAGAGCTTCTTCTTGTGTATGAGTTTATGCCAAAAGGAAGTTTGGAGAATCATCTCTTCAGAAGAAATCCTAACATTGAACCACTTTCTTGGAACACAAGAATCAAAATAGCTATTGGTGCAGCTAGGGGTTTGGCTTTCTTGCATGATTCTGAAAGCAAAGTCATATACAGAGATTTTAAGGCCTCCAATATACTCCTTGATGGGAGTTATAATGCAAAAATCTCAGATTTTGGATTAGCTAAATTGGGACCATCTGGGGGACAATCACATGTAACTACAAGAGTTATGGGCACATATGGTTATGCCGCTCCAGAATACATCGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGCTTTGGTGTGGTGTTATTAGAAATAATGACAGCCATGAGAGCACTAGACACAAAAAGGCCATCAGGACAACAAAACTTGGTGGAATGGGTGAAACCTTTACTCTCCAACAAGAAAAAGTTGAAAGGCTTAATGGATGGTAGAATAGAAGGACAATACTCACCAAAGGCAGCAATACAAGCAGCACAACTTTCTCTTAAATGTTTAGAAAATGACCCTAAACAACGTCCTTCAATGAAAGAAGTACTTGAGTCATTGGAAGCTATTGAAGCTATTAAGATCAAATTCAAATCTAAGGAATCCAAAAACAACATTTCTTATCAACCTCCAGTTATTCAAGCTGCTAGGCACCAAAGAGCTGTAAAGTATGATTAA 1245 0.3912 MGLCFSFLFPPSAPPQSSSSFNKPPLSSGSTSTIGFSATTSSAGRSQFSEVTSGSIDGTTEGSLRFASPNGQILERPNLKVFSFGDMKSATRGFKPDTLLGEGGFGKVYKGWLDEKTLTPAKAGSGVMVAIKKLNSESTQGFQEWQSEVNFLGRLSHPNLVKLLGYCWEDEELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRIKIAIGAARGLAFLHDSESKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEIMTAMRALDTKRPSGQQNLVEWVKPLLSNKKKLKGLMDGRIEGQYSPKAAIQAAQLSLKCLENDPKQRPSMKEVLESLEAIEAIKIKFKSKESKNNISYQPPVIQAARHQRAVKYD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02521 414 Gene3D Transferase(Phosphotransferase) domain 1 180 400 - -
Trre15g02521 414 MobiDBLite consensus disorder prediction 32 62 - -
Trre15g02521 414 ProSiteProfiles Protein kinase domain profile. 94 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02521 414 Gene3D Phosphorylase Kinase; domain 1 78 179 - -
Trre15g02521 414 CDD STKc_IRAK 100 379 - -
Trre15g02521 414 ProSitePatterns Protein kinases ATP-binding region signature. 100 133 IPR017441 GO:0005524
Trre15g02521 414 SUPERFAMILY Protein kinase-like (PK-like) 72 377 IPR011009 -
Trre15g02521 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Trre15g02521 414 FunFam Serine/threonine-protein kinase BIK1 60 179 - -
Trre15g02521 414 FunFam Serine/threonine-protein kinase PBS1 180 394 - -
Trre15g02521 414 PANTHER OS01G0588500 PROTEIN-RELATED 42 380 - -
Trre15g02521 414 Pfam Protein tyrosine and serine/threonine kinase 98 376 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02521 Trre-Chr15 21103406 21112518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02521 80 376 Glycoside Hydrolase AT3G07070 51.007 2.16e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre15g02521 PK_Tyr_Ser-Thr 5.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02521 - - gmx:100794193 634.409