Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02514 ATGCCGAAAGCTAAAGCTGATTCCAAACCCGCTGATAGCAGGTTGAAGCGTAAGGGTGCTGGAACCGGAAGGAAACAGACGAAGAAAGCCGCTAAGGATCCTAACAAGCCGAAGAGGCCACCGAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAACAGTATAAGAAGGATCATCCAAACAACAAATCCGTTGCCGCTGTCGGAAAAGCTTGCGGTGAAGAATGGAAATCGATGTCTGAAGAAGATAAAGCTCCCTATGTTGCTAGGGCATTGAAGAAGAAAGAAGAGTATGAAGTAACTATTCAGGCTTACAATAAGAAACTGGAGGGAAAAGATGAGGAAGATGGTTCTGACAAGTCAAAATCTGAAGTCAATGATGAAGATGAAGATGAGGAGGATGAGGATGATGATGACGATGATGAGTGA 429 0.4406 MPKAKADSKPADSRLKRKGAGTGRKQTKKAAKDPNKPKRPPSAFFVFMSEFREQYKKDHPNNKSVAAVGKACGEEWKSMSEEDKAPYVARALKKKEEYEVTIQAYNKKLEGKDEEDGSDKSKSEVNDEDEDEEDEDDDDDDE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02514 142 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Trre15g02514 142 Coils Coil 88 115 - -
Trre15g02514 142 CDD HMG-box_AtHMGB1-like 38 98 - -
Trre15g02514 142 MobiDBLite consensus disorder prediction 105 124 - -
Trre15g02514 142 Gene3D High mobility group box domain 21 128 IPR036910 -
Trre15g02514 142 MobiDBLite consensus disorder prediction 1 19 - -
Trre15g02514 142 PRINTS High mobility group (HMG1/HMG2) protein signature 3 23 - -
Trre15g02514 142 PRINTS High mobility group (HMG1/HMG2) protein signature 71 90 - -
Trre15g02514 142 PRINTS High mobility group (HMG1/HMG2) protein signature 90 110 - -
Trre15g02514 142 SMART hmgende2 36 107 IPR009071 -
Trre15g02514 142 MobiDBLite consensus disorder prediction 105 142 - -
Trre15g02514 142 MobiDBLite consensus disorder prediction 125 142 - -
Trre15g02514 142 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 4 138 IPR031061 -
Trre15g02514 142 MobiDBLite consensus disorder prediction 1 43 - -
Trre15g02514 142 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Trre15g02514 142 SUPERFAMILY HMG-box 24 108 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02514 Trre-Chr15 21042975 21044097 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre15g02514 HMG_box 3e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02514 K25507 - gmx:100499992 207.608
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02514 15 21042975 21044097 Trre15g02514 15 21042975 21044097 ECH