Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02504 ATGTCTTGTTCTTCTTCATCTGGGTCTGAAGATGACGATGAGGGCTTTGATTCTTACCGGAAAGGTGGCTACCATGCCGTTAGAGTCGGTGATCAGTTCGCCGGAGGAAGGTACATAGCTCAGAGGAAATTGGGTTGGGGTCAATTTTCAACCGTTTGGCTTGCTTATGATACTACAACTTCTGCATATGTTGCTCTCAAGATCCAGAAAAGTGCGGCACAATTTGTTCAGGCTGCCCTTCATGAGATAGATGTTCTTTCTTCCATTGCCGATGGCACCCCGTCAAATTTAAAATTTGTTGTTCAATTGATTGACCAATTTAAGCACACAGGCCCTAATGGCCAGCATCAGTGCATGGTACTCGAGTTTCTTGGAGATAGCTTGCTTCGTCTAATCAAATACAATCGTTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGTCAATGCATTTTGATCGGTTTGGATTACTTGCATAGAGAACACGGTATTATACACACAGACCTAAAACTGGAAAATGTTCTTCTGGTTTCGACCATTGATCCTGCCAAAGACCCTGTTAGGTCAGGAGTATCCCCGATTTTAGAGAGGCCCGAGGGAAACATAAACAGCACGGTTACTAGTCTTATCGAGAAAAAGTTGAAAAGGAGAGCGAGGAGGGCAGTAGCTAAAATATCTGGACAAAGAGCTTCAATGGGAGGAATGGGAGAAGTGGCAGAAGCTCCGAAGTCTGAGAGAAATATTGGTGGGATTGATGTGAGATGCAAAGTAGTAGACTTTGGAAATGCGTGTTGGGCTGATAAGCCATTTGCTGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTTATACTGCAGGCTGGTTATTCCTTCTCTGTCGACATGTGGTCTTTTGCTTGTATCGCTTTCGAGCTTGCCACTGGTGATATGTTGTTTACTCCTAAGGTCGGACAAGGTTTTAGCGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCGCGGAAGGTTGCTACTGCAGGAGCGAAATCCAAGGATTTCTTCGATAGACACGGAGATCTCAAAAGGATCCGAAGGCTAAAATATTGGCCACTTAACAAACTATTGATTGAAAGATACAAATTTTCAGAGAGCGACACTAATGAATTTTCGGAGTTTCTTACACCTCTTCTTGATTTTGCGCTCGAGAAGCGACCAACCGTGCAGCAGTGTCTGCAACACCCTTGGCTCGCGGGAAAGGACTCCATTCCTAATGACATGAGAACTGAATCTAGTGTTGAAAAAGTGGATGTTGGAATAAGCAACCTTAATATCAAGGTGGGGAAATGA 1347 0.4395 MSCSSSSGSEDDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSAYVALKIQKSAAQFVQAALHEIDVLSSIADGTPSNLKFVVQLIDQFKHTGPNGQHQCMVLEFLGDSLLRLIKYNRYKGLPLNKVREICQCILIGLDYLHREHGIIHTDLKLENVLLVSTIDPAKDPVRSGVSPILERPEGNINSTVTSLIEKKLKRRARRAVAKISGQRASMGGMGEVAEAPKSERNIGGIDVRCKVVDFGNACWADKPFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKYWPLNKLLIERYKFSESDTNEFSEFLTPLLDFALEKRPTVQQCLQHPWLAGKDSIPNDMRTESSVEKVDVGISNLNIKVGK 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02504 448 SUPERFAMILY Protein kinase-like (PK-like) 32 421 IPR011009 -
Trre15g02504 448 ProSiteProfiles Protein kinase domain profile. 38 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02504 448 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Trre15g02504 448 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 8 224 - -
Trre15g02504 448 Pfam Protein kinase domain 256 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02504 448 Pfam Protein kinase domain 39 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02504 448 FunFam Serine/threonine-protein kinase SRPK 115 416 - -
Trre15g02504 448 SMART serkin_6 38 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02504 448 Gene3D Transferase(Phosphotransferase) domain 1 92 416 - -
Trre15g02504 448 FunFam Protein kinase superfamily protein 24 123 - -
Trre15g02504 448 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Trre15g02504 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02504 Trre-Chr15 20944346 20954657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02504 4 431 EF-hand Containing Proteins AT5G22840 49.580 9.43e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Trre15g02504 Pkinase 6.6e-21 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02504 K08832 - gmx:100814976 763.066