Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02502 ATGATTAGAGTTTGGATTGTGCTGTTGATGGTTCTCTCCAATTTGTTCTCTTCAACTGTGGTTGGCTTGGATAATTCCACAGTACCTCCAGTTGTAAATATTGGGGTTCTCTACTCTTTCAATACTAGTGTTGGTAGAATAGTGAAAATTGCGGTAGAAACTGCTGTTAAGGATATAAATTCTGATCCTTCTATTCTTGGTAACACTAAGTTGAAGCTCTCACTGCAAGAAGATTCCAAATATAGAGGCTTTTTGAGCATTGCTGAGGCGTTGCAGCTCATGGCGACACACACTGTGGCCATTATCGGTCCACAGACCTCTACAACAGCTCATGTCATATCTCATATAGCAAATGAACTCCAGGTTCCTCTGTTATCATTTTCAGCAACTGATCCTACTCTTTCTTCGCTTCAATTCCCATTCTTCATTAGAACTTCCTTCAATGACATTTTTCAAATGACTGCAATAGCAGACATTGTAAGCCACTATGGTTGGAGAGAGGTTATCGCAGTCTATGGTGATGACGACCATGGGAGGAATGGAATTGGTGGATTAGGGGATAAGCTTGTAGAGAGACGTTGCAAGATCTCGTTTAAAGCGCCAATGCCTCCCGAGGCAACAAATGAGGAGATTACTGATGTGCTTGTTCAGGTGGCGTTGGCAGAATCCCGGGTTATAGTTCTTCACACAAGTACTGCTTGGGGTCCAAAAGTGTTGAGTGTGGCAAAGTCTCTTGGAATGATGCAAAATGGTTATGTTTGGATTGCTACTACTTTTCTCACATCTTTTATTGACATAGATAGTCCTCTCTCTTCAGATGAAATGGATAACATGCAAGGAGTTATTGCACTAAGAATGTACATACCAGATTCAAAGCTCAAAAGATCGTTCATTTCTAGGTGGACGAATTTGACTAGTGGAAAGGAGGGAAGCGGTCCTCTTGGTTTGAGTACTTATGGTATCTTTGCTTATGATACTGTTTACGTTCTTGCTCGTGCCCTTGATGCATTTTTCAAACAAGGGAACCGAATTACATTTTCACATGATCCAAAGATATCAGAAATAAGTGGAGACAGCTTGCATCTTGATGCTGTGAAAATCTTCAATGAAGGAAATCAGCTGCGCAAAAGTATTCACAAGGTTAATATGACTGGTGTAACAGGTCCATTCAGGTATACATCTGATGGAAACCTTGCTAATCCAGCATATGAGATCATCAATGTGATCGGAACAGGGACTCGCAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAATTGTTCCTCCAGAAACACTTTATTCAAAACCACCTAATCGTTCCATTGAAAACCAAAAGCTACTCACTGTGTTTTGGCCGGGTGAAACAACCCAATTACCTCGAGGTTGGGTTTTTCCGAACAATGGAAAGATGTTAAAAATCGGAGTACCGAAAAGGGTTAGTTACCGCGAATTTGTTTCTCAGGTACAATCCACTGACATGTTCAAGGGATTCTGCATTGATGTATTTCTTTCTGCAGTAAACTTGTTGCCCTATGCTGTCCCCTATAAGTTTGTTCCATATGGTGATGGTCAAAGCAATCCTAGTAACACCGAGCTTGTGCGCCTGATCACTGCCGGGGTCTTTGATGCTGCAGTAGGTGACATTACAATTACTACAGAAAGAACAAAGATGGTGGATTTTACTCAGCCATATATAGAGTCTGGTCTAGTGGTCGTAGCATCGGTTAAGAAGACGGATTCCAATGCTTGGGCATTTTTGACACCATTTACACCGATGATGTGGACTGTAACAGCTATCTTTTTCCTACTAGTGGGAGCTGTTGTTTGGATTCTAGAGCATAGACTGAATGATGATTTTAGGGGACCTCCTAAAAAACAAGTAGCCACAATTTTGTGGTTTAGTTTTTCAACTATGTTCTTCGCTCACAGGGAAAATACTGTGAGCACTCTTGGTCGTTTTGTGCTACTTATATGGCTATTTGTAGTTCTAATAATCAACTCGAGTTACACGGCAAGCCTGACTTCAATCCTCACAGTGCAACAACTTTCTTCACCTATAAAAGGAATTGAAAGTTTAGTAAATAGCAAAGAGCCCATTGGTTACTTGCAGGGTTCTTTTGCCCGATCTTATTTAATCGACGAAATTGGTATTCATGAATCCAGACTAGTTCCTCTAAAAACACCTGAAGAAACTATGAAAGCACTGGAGAAAGGTCCCCAAAAGGGTGGTGTTGCTGCATACATTAACGAGCGTGCTTACATAGAGCTCTTCCTTTCAAGCCGGTGTGATTTTTCTATTGTAGGTCAAGAGTTTACCAGAAATGGTTGGGGATTTGCCTTTCCACCAGACTCGCCATTAGCGGTTGACCTGTCAACTGCCATTTTAGAGTTAGTAGAAAATGGAGATTTACAAAGAATCCATGACAAATGGCTTTTGAGCAGTGCTTGTCGATCACAAGGTGCAAAGCTTGAAGTGGATAAACTCAATCTTAAAAGCTTTTGGGGCCTCTATCTAGTCTGTGGTTTGGCATGTGCACTTGCTCTCCTAATATATCTTATTCAGACCTTGAGGCAGTACAAGAAACACAGTCCAGAGGAACTTGAGTCTTCTGGCCATGGTTCGGGATCTTCGCGTCTGCGGACTTTCCTTTCATTTGTAGATGAAAAGGAAGATATAGTTAAGAGCCGCTCCAAGAGAAGGCAAATGGAGAGGATTTCATATAGAAGCACAAGTGAGGTTGGATCCAACATCAACTCCAATAAAGATTTGTCTCGGTCATCGACATCATTAAATAGAATTGATGCTGCTAATGAAGTCTGA 2823 0.4127 MIRVWIVLLMVLSNLFSSTVVGLDNSTVPPVVNIGVLYSFNTSVGRIVKIAVETAVKDINSDPSILGNTKLKLSLQEDSKYRGFLSIAEALQLMATHTVAIIGPQTSTTAHVISHIANELQVPLLSFSATDPTLSSLQFPFFIRTSFNDIFQMTAIADIVSHYGWREVIAVYGDDDHGRNGIGGLGDKLVERRCKISFKAPMPPEATNEEITDVLVQVALAESRVIVLHTSTAWGPKVLSVAKSLGMMQNGYVWIATTFLTSFIDIDSPLSSDEMDNMQGVIALRMYIPDSKLKRSFISRWTNLTSGKEGSGPLGLSTYGIFAYDTVYVLARALDAFFKQGNRITFSHDPKISEISGDSLHLDAVKIFNEGNQLRKSIHKVNMTGVTGPFRYTSDGNLANPAYEIINVIGTGTRRIGYWSNYSGLSIVPPETLYSKPPNRSIENQKLLTVFWPGETTQLPRGWVFPNNGKMLKIGVPKRVSYREFVSQVQSTDMFKGFCIDVFLSAVNLLPYAVPYKFVPYGDGQSNPSNTELVRLITAGVFDAAVGDITITTERTKMVDFTQPYIESGLVVVASVKKTDSNAWAFLTPFTPMMWTVTAIFFLLVGAVVWILEHRLNDDFRGPPKKQVATILWFSFSTMFFAHRENTVSTLGRFVLLIWLFVVLIINSSYTASLTSILTVQQLSSPIKGIESLVNSKEPIGYLQGSFARSYLIDEIGIHESRLVPLKTPEETMKALEKGPQKGGVAAYINERAYIELFLSSRCDFSIVGQEFTRNGWGFAFPPDSPLAVDLSTAILELVENGDLQRIHDKWLLSSACRSQGAKLEVDKLNLKSFWGLYLVCGLACALALLIYLIQTLRQYKKHSPEELESSGHGSGSSRLRTFLSFVDEKEDIVKSRSKRRQMERISYRSTSEVGSNINSNKDLSRSSTSLNRIDAANEV 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02502 940 PIRSF IGluLR_plant 1 940 IPR017103 -
Trre15g02502 940 MobiDBLite consensus disorder prediction 897 940 - -
Trre15g02502 940 Pfam Bacterial extracellular solute-binding proteins, family 3 516 812 IPR001638 -
Trre15g02502 940 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Trre15g02502 940 CDD GluR_Plant 470 812 - -
Trre15g02502 940 Gene3D - 747 819 - -
Trre15g02502 940 MobiDBLite consensus disorder prediction 908 940 - -
Trre15g02502 940 FunFam Glutamate receptor 583 713 - -
Trre15g02502 940 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Trre15g02502 940 Gene3D - 471 582 - -
Trre15g02502 940 FunFam Glutamate receptor 148 302 - -
Trre15g02502 940 SUPERFAMILY Periplasmic binding protein-like II 447 814 - -
Trre15g02502 940 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 890 IPR015683 -
Trre15g02502 940 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Trre15g02502 940 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Trre15g02502 940 FunFam Glutamate receptor 709 816 - -
Trre15g02502 940 Gene3D - 50 400 - -
Trre15g02502 940 Gene3D - 583 709 - -
Trre15g02502 940 FunFam Glutamate receptor 467 583 - -
Trre15g02502 940 Pfam Receptor family ligand binding region 49 410 IPR001828 -
Trre15g02502 940 Gene3D - 148 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02502 Trre-Chr15 20930955 20935181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02502 5 914 Ion Channels AT3G51480 59.803 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02502 K05387 - gmx:100788917 1564.28