Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02501 ATGAAACCTCTTTTCTTTCTCTTCATCTTCCTCCTCTCGCTTCTCAATAAACAACGTTGCTGCATCGTCAACGCTCTTTCTCGCTCACCTACATCACGTTCCATTCTCTCTCTTCCTCCTCCTAAGGCAGCAACTACAGCACTGTTTGCCGCACTAGATGGGACCATGTATTTGGTGGCCAGCCAGGAGAACGGTTCCATGAGGGTAATATGGTCATTCTCCACAGGATCACCGATCTATAGTTCGTATCAAGCTCCTATCAATAAGGACCGTGGTAAAAAAAATACATCTTCAGCACCAACCAACGGGTTCGTGGAGTGTGGGGATGATTGGTCTTTGTACATGCACGACAAGATCCTCGGTAAAATGAGATTGTCAGAATCTATTGCAGAATTTGTACATCGTGCACCTATCATTTCAGATGACGGAACTGCTATATTTGGGTACAAAGAAGACAGTCTGTTTGAAGTTGATGCTAAAACAGGGTCGATCATTCAAATTCACGCCAAATCTGATCCTGGTAATGCTTCTGCACCTTTGAGAGATGACAGGCTGAGCGCTAAAAATATCATCAGTGCGGATAATAAGGATCTTGCTGATCCTGAGAAGCTAAATTCATCACAGCCGCTGCTCATGCTTTTTAGGAAAGATTATACTCTGAAGTCTGTTAACACCAGCTCAAAAATAGTATTGTGGAATTTGACAGTAACTGAATTTGAAGCTGTATTATTATGCCAACATACTACAGTTGATGTAGAGGATGAAATTCCTTCTGACAGTGGCTTCAATTTTGCGATGCCTTACCCATGTCAAGAGATGCAAAACGTCTTTCGCATGAAAAAGAGTTTTCTGTTAAAATCTTTAATCACTGAAAGTTTAGTTGGGCCTTTTCATGAAAATGATATACTCTCAACGACTGCCTCGCATTGGATGATTCCATTGCAACCCAGTGTTGATAGATTTTTTGATGGTCATGATGGTAATATCACATTTCTTCCTACACCTTTGCCATATTCTATGCCCTATCTGCAACAAAATAATGTTCAGGCACATAAACTCCCTCCGCCTCTCATTGAGATTACTTCACCAAGTGATGTTTATTTGAACAAGAAGAGTGGATGGTCAACTCCATTACCTCGTATATTGTTTAGGGTCTTTCTTTTGGTGTTAGGCTTTTCACTCATCTGCTTTCTTCTGGTGAAGGTGATTAAGAATCAAGATACACCAAAGGACCAAAACAGAGAGTATGAATTGAAAAGTTCACCTGCAAAGAGAAATAAAACGCACAAGTCAGGAAAGAACGGTGACACTATTGATAAAATGGAAAACCATCTTTCTTCAGAAGATGAAGATGCACTGACACGAAAAGATACTAATAGAGAAGAATGGCAGAACTTTAATCAAGTTGATGAAGGTTTTGATGGACGGAAAATTGGTAAATTATTCGTTTCAAATGAAGAGATTGCTAAGGGAAGCAATGGTACAATTGTCCTTGGCGGAAGATATGAAGGTCGACCAGTTGCAGTTAAGCGTCTTGTCAAAGCTCATCACAAGGTAGCCTATAAAGAAATCCGAAATCTCATTGTGTCTGACCGTCATCCAAACATTGTCCGATGGCATGGGGTGGAGTATGATCAAGATTTTATTTACCTAGCACTGGAACGTTGTACTTGCAACTTGGATGATTTGATAAAGGGCCAAATGGAGACAGGGAAGGATAGTACACAGTATCTTTGGAAAGAAAATGGCTATCCATCAGCTCTATTGCTGAAATTGATGAGGGATATTGTTTCCGGGGTTGTTCATTTGCATGATCTAGGAATAATACATCGAGATTTGAAACCCCAAAATGTTCTAATAAACAACGAAAGATCCTTATGTGCAAAACTTTCTGACATGGGCATTAGCAAACTTCTTCTTGAAAATATGTCCTCTTTGGGTCATAATGCTACTGGTGGGGGAAGTTCAGGTTGGCAAGCCCCAGAGCAGCTTGATCAAGGGCGCCAAACACGAGCTGTTGATATGTTCAGTTTAGGTTGCATTCTTTTTTTCTGTATGACTCAGGGACGACATCCATTTGGACAACATCTTGAACGTGATATCAATATTGTGAAAAATAAAAAAAATCTTTCCTTAGTACAATTCATTCCGGAAGCTGAGGATCTTATTAGCTGTTTATTAAACGCTGACCCTGACCTAAGGCTGAAAGCAATTGAAGTATTGCACCATCCTTTTTTCTGGAGTTCTGAGACGAGACTTTCATTTTTACGTGACACTAGTGATAGGGTGGAACTGGAAGATAAAGATATTAATTCTAGTCTTTTGAGGGCGTTAGAAAGCATTGCCACAACAGCCTTAGGTGGTAAATGGGATGAAAAGATGGAACCGGCTTTCATTGCTAACATTAGTCGTTACCGGCGTTATAAGTTTAACAGTGTCCGAGACTTGTTGCGGGTTATGAGAAACAAGCTAAATCATTATGGAGAATTGCCGCAAGAAATCCAGGAACTAGTTGGACCTGTTCCTGAAGGATTCAACGACTACTTTGCAAACCGATTCCCCAGACTCTTGATTGAAGTTTATAATGTTATATGCAAGCATTGCAAGGAAGAAGAGTGTTTTCAAAGGTATTTTAAAAATGACGATTTCCTTTGTATGGCCTGA 2664 0.4013 MKPLFFLFIFLLSLLNKQRCCIVNALSRSPTSRSILSLPPPKAATTALFAALDGTMYLVASQENGSMRVIWSFSTGSPIYSSYQAPINKDRGKKNTSSAPTNGFVECGDDWSLYMHDKILGKMRLSESIAEFVHRAPIISDDGTAIFGYKEDSLFEVDAKTGSIIQIHAKSDPGNASAPLRDDRLSAKNIISADNKDLADPEKLNSSQPLLMLFRKDYTLKSVNTSSKIVLWNLTVTEFEAVLLCQHTTVDVEDEIPSDSGFNFAMPYPCQEMQNVFRMKKSFLLKSLITESLVGPFHENDILSTTASHWMIPLQPSVDRFFDGHDGNITFLPTPLPYSMPYLQQNNVQAHKLPPPLIEITSPSDVYLNKKSGWSTPLPRILFRVFLLVLGFSLICFLLVKVIKNQDTPKDQNREYELKSSPAKRNKTHKSGKNGDTIDKMENHLSSEDEDALTRKDTNREEWQNFNQVDEGFDGRKIGKLFVSNEEIAKGSNGTIVLGGRYEGRPVAVKRLVKAHHKVAYKEIRNLIVSDRHPNIVRWHGVEYDQDFIYLALERCTCNLDDLIKGQMETGKDSTQYLWKENGYPSALLLKLMRDIVSGVVHLHDLGIIHRDLKPQNVLINNERSLCAKLSDMGISKLLLENMSSLGHNATGGGSSGWQAPEQLDQGRQTRAVDMFSLGCILFFCMTQGRHPFGQHLERDINIVKNKKNLSLVQFIPEAEDLISCLLNADPDLRLKAIEVLHHPFFWSSETRLSFLRDTSDRVELEDKDINSSLLRALESIATTALGGKWDEKMEPAFIANISRYRRYKFNSVRDLLRVMRNKLNHYGELPQEIQELVGPVPEGFNDYFANRFPRLLIEVYNVICKHCKEEECFQRYFKNDDFLCMA 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02501 887 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 571 748 - -
Trre15g02501 887 Gene3D Phosphorylase Kinase; domain 1 469 554 - -
Trre15g02501 887 Pfam Ribonuclease 2-5A 752 878 IPR010513 GO:0004540|GO:0006397
Trre15g02501 887 Gene3D KEN domain 749 885 IPR038357 -
Trre15g02501 887 Gene3D Transferase(Phosphotransferase) domain 1 555 748 - -
Trre15g02501 887 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 48 235 IPR011047 -
Trre15g02501 887 PANTHER IRE1-RELATED 123 881 IPR045133 GO:0004521|GO:0004674|GO:0030968
Trre15g02501 887 ProSiteProfiles Protein kinase domain profile. 482 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02501 887 Gene3D - 32 252 IPR015943 GO:0005515
Trre15g02501 887 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Trre15g02501 887 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 750 882 - -
Trre15g02501 887 SMART serkin_6 482 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02501 887 MobiDBLite consensus disorder prediction 410 456 - -
Trre15g02501 887 ProSiteProfiles KEN domain profile. 749 880 IPR010513 GO:0004540|GO:0006397
Trre15g02501 887 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 474 554 - -
Trre15g02501 887 SMART PGNneu 811 865 - -
Trre15g02501 887 Pfam Protein kinase domain 484 746 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02501 887 SUPERFAMILY Protein kinase-like (PK-like) 476 760 IPR011009 -
Trre15g02501 887 CDD RNase_Ire1 750 878 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02501 Trre-Chr15 20922418 20930171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02501 508 745 MAP Kinase Kinase Kinase AT3G06030 28.099 3.79e-23 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre15g02501 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02501 K08852 - gmx:100788389 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01422 9 12154430 12160331 Trre15g02501 15 20922418 20930171 PCT