Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02492 ATGACTCGCACACTTAGAACATTACAATCTATTTCCTCCGCCGCACCACCGCCGGAATCCGCCGCCTCATTAGAATCCGACTTTGTTGTCATCCTAGCCGCTCTCCTCTGTGCTCTTATTTCCGTCGTGGGTTTAACCGCCATCGCACGTTGTGCATGGCTCCGCCGTGGTCCGGTCGCCGGAGCTTCGCCGGCGACGGCGGTTGTCAACAAAGGTCTCAAAAAGAAGGTTCTCAATTCACTTCCAAAATTCACTTACAGTGACGGAAGTCCCGGAAAATGGGTAGTCTCGTCGGAGTGCGCCATTTGTCTCTCGGAGTTCACCGCCGGCGAAGAGGTCCGGGTACTTCCTCAGTGTGGACATGGATTCCACGTGGCATGTGTTGACACGTGGCTTGGGTCTCACTCTTCTTGTCCTTCTTGCCGTGCTCCTTTTGCCGTCGCTAGGTGCCAGAAATGTGGCCTTTATCAGCCTACGCCTGCCGGAGATGTTGCCGGTGAAACGGAGACGAAATCCGGCGGCGGAGAGAATGGTGAAGTTGTTGTTAATGTTAATTGTAATGGTGAGAGTGTTGATAGACATAGCCACGGTGTTTATAATAATGGCTTCTTGCCTTAA 618 0.5259 MTRTLRTLQSISSAAPPPESAASLESDFVVILAALLCALISVVGLTAIARCAWLRRGPVAGASPATAVVNKGLKKKVLNSLPKFTYSDGSPGKWVVSSECAICLSEFTAGEEVRVLPQCGHGFHVACVDTWLGSHSSCPSCRAPFAVARCQKCGLYQPTPAGDVAGETETKSGGGENGEVVVNVNCNGESVDRHSHGVYNNGFLP 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02492 205 MobiDBLite consensus disorder prediction 1 20 - -
Trre15g02492 205 FunFam E3 ubiquitin-protein ligase ATL6 62 148 - -
Trre15g02492 205 SMART ring_2 100 141 IPR001841 -
Trre15g02492 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 147 IPR013083 -
Trre15g02492 205 Pfam Ring finger domain 99 142 IPR001841 -
Trre15g02492 205 CDD RING-H2_EL5-like 99 142 - -
Trre15g02492 205 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Trre15g02492 205 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 154 - -
Trre15g02492 205 SUPERFAMILY RING/U-box 78 147 - -
Trre15g02492 205 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02492 Trre-Chr15 20812016 20812633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02492 1 153 C3H Transcription Factor Family AT1G20823 60.241 1.60e-58 181
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g01438 9 12256251 12256883 Trre15g02492 15 20812016 20812633 PCT