Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02464 ATGATCATTGATATGCCACCATCGATGGCTGAAAATCCTAGGACAACAAGCAGATCTTTCTTTAGCTCTAGCAATGGCAATGGGAGCATCCCTGTGAACAATGCTGATGATTATGATAGCGATAGCTCAAATTTGGCACCACGCACACCATCAACTCTGTCTATGGCTGTTCCAGCTGAACTCGCTGGAGCTATACCCTTGATCGACAAATTTCAGGTGGATGGATTTTTAAAACTGATGCATAAACAAATTCAATCTTCTGGAAAACGTGGATTTTTTTCTAAAAGATCTTCAGATCCCCAAGCTCGTGAAAAATTTACATTTGAAGACATGCTGTCTTTTCAAAAGGATCCAATACCAACTGCATTGCTTAAGATTAATGGCGATTTAGTAAGTCGGGCGACAAAATTATTCCAGATAATTTTGAAGTATACTGGAGTTGATTCATCTGATTGTGCAACTCCATTAAGCTTAGATGAACGAGTTGAGCTCGTTGGGAAACTATACAAGCAAAGTTTGAAACGTGCAGAACTCCGAGACGAGCTTTTTGTTCAGATATCAAAACAAACAAGAAATAACCCTGACAGGCAATACTTGATCAAAGCATGGGAGCTTATGTATGTATGTGCATCCTCCATGTCTCCTAGTAAAGACATTGCGGCTTATCTGTCAGAATACATTCAGAACATAGCATATGGAGTAGCAACTGATTCTGAGATCCAAAACCTTGCACTAAATACGTTGAATGCTTTGAAGCGTTCTGTTAAGGCTGGTCCCAGACATATAATACCTGGGCGAGAGGAGATTGAAGCTCTGTTGACCGGGAGAAAGCTTACAAATATAGTGTTTTTCTTAGATGAAACGTTTGAAGAAATTACATATGACATCTCAACAACAGTAGCCGACGCTGTTGAGGAACTTGCAGGGCTCATTAAACTGTCGACTTACTCTAGCTTTAGTTTGTTTGAATATCGTAAAGTTGTTACAAGTTCCAAATCACCTGATCCTGGTAATGAGGAGTACATTGGGTTAGATGATAACAAATATATTGGGGATCTCCTGGCGGAATTTAGAGCAGCAAAAGATCGAAGTAAGGGAGAAATCTTGCACTGTAAACTGATATTCAAGAAAAAGCTATTTCGTGAGTCAGATGAAGCCGTGACCGATCCAATGTTTCTACAGTTGTCCTATGTACAATTGCAACATGATTATATTTTGGGTAATTACCCTGTTGGAAAAGACGATGCTGCTCAGCTTTCTGCATTACAAATCTTGGCTGAGATTGGATTTGTTAGCACACCCGAAACATGCACTAACTGGAATTCACTTCTGGAGCGATTCCTTCCTAGACAAATTTCAATGACACGAGCAAAACGTGAATGGGAGTTTGATATTATATCTCGATATCATTCATTGGAGCATCTGACAAAAGATGATGCAAGACAACAATTTCTGCGTATACTGAGAGCACTTCCTTATGGAAATTCTGTTTTCTTCAACGTTCGCAAAATTGATGATCCTATTGGTATCTTGCCTGGACGAATAATGATTGGAATCAATAAAAGAGGGATTCATTTTTTCCGTCCAGTTCCTAAGGAATATTTGCACTCAGCTGAGTTGAGAGACATAATGCAATTCGGAAGCAGCAACACTGCAGTCTTTTTTAAAATGCGAGTAGCAGGTGTTCTTCACATATTCCAATTTGAAACCAAGCAGGGGGAAGAAATCTGCGTAGCTCTTCAGACACATATAAATGATGTAATGCTGCGCCGCTATTCGAAAGCACGTTCTTCTAGTGGCGGTAGTTCTTTGAATGGAGATGTTTCAAGTAATTCAAAGCCTCCTAATTTAGAATCATATGAGAAACGCATTCAAGATTTATCAAAACTTGTTGAAGAATCTCAAAGAAATGCTGATCAATTGAATAAAGAACTGCGTGAGAAGCAAGAACAGGAAGAAAAAATGCAAGAACAATTGGAGGGTTTGAAGGAATCCTTAAAAACCAACGAGCAAAATCTTAAGGCAGTTACAAGTGACTGTGAAAGGCTTAGGTTATTATGCAATAAAAAAGATCAGGCGCTACAGGTTATAGAGAACCATTCCAAAAAGGATATTGTTGAAACAAATAACCAAGTGCTGCAAAAGCTTAAATATGAGCTAAAAAATTGTAAAGATGAACTGCTTTCAGCCGAACTAACTATCAAAACCTTGACAAGTGAAAAAATGATTTTGGAACAGAAGCTATCTGTGCTTGAGAAGAGGATCGCCGAAGAGAGTAGTTCTCTTCAACGGAAATTTGAGCAAGAGCGCAAAGCTGTGAAGTCTGAAGTGTACGACCTTGAAAGAAAGCTAGAAGGGTATAGACAAGAATTAATGACTGCTAAGTCTATTATTTCAGTCAAGGACACCGAGTTGGCTGCATTGCAAAATAATTTCAAGGAATTGGATGAATTACGAGAAATGAAAGAGGACATTGATAGAAAGAATGAACAGACAGCTGCCATATTGAAGATGCAAGGGGCTCAACTAGCCGAAATGGAAGCCCTTTATAAGGAAGAACAAGTTTTAAGGAAGCGTTATTTTAATGTAATAGAAGACATGAAAGGCAAGATTCGAGTTTATTGTCGGCTAAGACCTCTTAGTGAAAAAGAGATTGCTGAGAAGGAAAGAGAAGCTGTTAGTGCAGTAGATGAGTTTACTGTTGAGTTTCTATGGAAAGATGATAAGCCGAAGCAGTACATATATGATCGTGTTTTTGGCAGTGATGCAAATCAAGAAAGTGTATTTGAGGATACCAGGTATTTGGTGCAATCTGCTGTAGATGGTTATAATGTGTGCATATTTGCTTATGGTCAAACTGGCTCTGGAAAGACGTTTACAATCTATGGTTCTGAAGATAATCCCGGGCTTACCCCTCGTGCAATTAGTGAACTTTTTAGAATTATACGGAGAGATAGTAACAAGTATTCCTTTTCCTTGAAGGCATACATGGTGGAATTATATCAAGATACTCTAATAGATCTTCTGTTACCTAGGAATGCAAAGCATTCAAGATTAGATATCAAGAAGGATTCAACGGGAATGGTTGTTGTGGAAAATGTGACGGTGATGTCAATTTCTACAATTGAAGAATTGAATCATATAATACAAAAGGGATCTGAACGTCGACATATATCAGGGACACAAATGAATGAAGAAAGTTCAAGATCTCATCTCATTCTTTCAATAGTAATTGAAAGCACCAACCTTCAAAGCCAATCAGTTGCAAGGGGAAAGTTGAGTTTTGTTGATCTTGCTGGTTCAGAAAGAGTGAAAAAGTCAGGTTCTATGGGTAGTCAGCTGAAGGAAGCACAGAGTATTAACAAATCATTATCAGCACTTGGAGATGTTATAAGTGCTTTGTCTTCTAGCGGTCAACACACACCTTATAGGAATCACAAGTTAACAATGTTGATGAGTGATTCACTTGGTGGTAATGCCAAAACTCTCATGTTTGTCAATGTTTCTCCAATAGAATCAAGCTTGGATGAGACTCATAACTCTCTCACGTATGCTTCAAGAGTGAGATCAATTGTGAATGACCCTAACAAAAATGTTAGTTCAAAAGAAGTAGCGCGATTAAAGAAATTGGTTGCATATTGGAAACAACAAGCTGGTAGAGGAATTGAGTATGAAGATTTAGAAGAAATTCAAGAAGAACGATCACCTAAAGATAGACCAGATAGTCATGGTAGCTCCAGATCTAGTCTAGGTGGTAAATAA 3762 0.383 MIIDMPPSMAENPRTTSRSFFSSSNGNGSIPVNNADDYDSDSSNLAPRTPSTLSMAVPAELAGAIPLIDKFQVDGFLKLMHKQIQSSGKRGFFSKRSSDPQAREKFTFEDMLSFQKDPIPTALLKINGDLVSRATKLFQIILKYTGVDSSDCATPLSLDERVELVGKLYKQSLKRAELRDELFVQISKQTRNNPDRQYLIKAWELMYVCASSMSPSKDIAAYLSEYIQNIAYGVATDSEIQNLALNTLNALKRSVKAGPRHIIPGREEIEALLTGRKLTNIVFFLDETFEEITYDISTTVADAVEELAGLIKLSTYSSFSLFEYRKVVTSSKSPDPGNEEYIGLDDNKYIGDLLAEFRAAKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFLQLSYVQLQHDYILGNYPVGKDDAAQLSALQILAEIGFVSTPETCTNWNSLLERFLPRQISMTRAKREWEFDIISRYHSLEHLTKDDARQQFLRILRALPYGNSVFFNVRKIDDPIGILPGRIMIGINKRGIHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKARSSSGGSSLNGDVSSNSKPPNLESYEKRIQDLSKLVEESQRNADQLNKELREKQEQEEKMQEQLEGLKESLKTNEQNLKAVTSDCERLRLLCNKKDQALQVIENHSKKDIVETNNQVLQKLKYELKNCKDELLSAELTIKTLTSEKMILEQKLSVLEKRIAEESSSLQRKFEQERKAVKSEVYDLERKLEGYRQELMTAKSIISVKDTELAALQNNFKELDELREMKEDIDRKNEQTAAILKMQGAQLAEMEALYKEEQVLRKRYFNVIEDMKGKIRVYCRLRPLSEKEIAEKEREAVSAVDEFTVEFLWKDDKPKQYIYDRVFGSDANQESVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEDNPGLTPRAISELFRIIRRDSNKYSFSLKAYMVELYQDTLIDLLLPRNAKHSRLDIKKDSTGMVVVENVTVMSISTIEELNHIIQKGSERRHISGTQMNEESSRSHLILSIVIESTNLQSQSVARGKLSFVDLAGSERVKKSGSMGSQLKEAQSINKSLSALGDVISALSSSGQHTPYRNHKLTMLMSDSLGGNAKTLMFVNVSPIESSLDETHNSLTYASRVRSIVNDPNKNVSSKEVARLKKLVAYWKQQAGRGIEYEDLEEIQEERSPKDRPDSHGSSRSSLGGK 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02464 1253 ProSiteProfiles MyTH4 domain profile. 114 273 IPR000857 GO:0005856
Trre15g02464 1253 SUPERFAMILY Prismane protein-like 813 874 IPR011254 GO:0003824|GO:0016491
Trre15g02464 1253 MobiDBLite consensus disorder prediction 10 46 - -
Trre15g02464 1253 Coils Coil 763 790 - -
Trre15g02464 1253 MobiDBLite consensus disorder prediction 596 618 - -
Trre15g02464 1253 Coils Coil 706 754 - -
Trre15g02464 1253 SMART kinesin_4 868 1199 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 Pfam FERM central domain 384 498 IPR019748 -
Trre15g02464 1253 SMART B41_5 274 498 IPR019749 -
Trre15g02464 1253 ProSiteProfiles Kinesin motor domain profile. 870 1191 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 SUPERFAMILY Second domain of FERM 376 493 IPR035963 -
Trre15g02464 1253 CDD KISc_C_terminal 868 1193 - -
Trre15g02464 1253 Gene3D - 1194 1242 - -
Trre15g02464 1253 Gene3D - 390 491 IPR014352 -
Trre15g02464 1253 ProSiteProfiles FERM domain profile. 278 592 IPR000299 GO:0005856
Trre15g02464 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 870 1217 IPR027417 -
Trre15g02464 1253 ProSitePatterns Kinesin motor domain signature. 1091 1102 IPR019821 GO:0003777|GO:0005524|GO:0007018
Trre15g02464 1253 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 496 605 - -
Trre15g02464 1253 Coils Coil 805 835 - -
Trre15g02464 1253 Gene3D Kinesin motor domain 813 1192 IPR036961 -
Trre15g02464 1253 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 277 380 - -
Trre15g02464 1253 SUPERFAMILY PH domain-like 498 586 - -
Trre15g02464 1253 Gene3D - 496 604 IPR011993 -
Trre15g02464 1253 Pfam Kinesin motor domain 876 1191 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 MobiDBLite consensus disorder prediction 1 46 - -
Trre15g02464 1253 Coils Coil 617 679 - -
Trre15g02464 1253 MobiDBLite consensus disorder prediction 1224 1253 - -
Trre15g02464 1253 CDD FERM_B-lobe 393 491 IPR019748 -
Trre15g02464 1253 Gene3D MyTH4 domain 92 275 IPR038185 -
Trre15g02464 1253 SMART MyTH4_1 114 273 IPR000857 GO:0005856
Trre15g02464 1253 MobiDBLite consensus disorder prediction 1224 1244 - -
Trre15g02464 1253 Pfam MyTH4 domain 167 271 IPR000857 GO:0005856
Trre15g02464 1253 FunFam Kinesin-like calmodulin binding protein 381 492 - -
Trre15g02464 1253 PRINTS Kinesin heavy chain signature 942 963 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 PRINTS Kinesin heavy chain signature 1061 1078 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 PRINTS Kinesin heavy chain signature 1092 1110 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 PRINTS Kinesin heavy chain signature 1141 1162 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Trre15g02464 1253 CDD FERM_C_KCBP 495 596 - -
Trre15g02464 1253 PANTHER MYOSIN VII, XV 33 876 - -
Trre15g02464 1253 FunFam Kinesin-like calmodulin-binding protein 814 1193 - -
Trre15g02464 1253 Gene3D - 277 381 - -
Trre15g02464 1253 FunFam Kinesin-like calmodulin-binding protein (ZWICHEL) 93 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02464 Trre-Chr15 20510086 20517676 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02464 30 1242 Calmodulin-binding Proteins AT5G65930 70.579 0.0 1773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02464 - - gmx:100807481 1999.94