Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02439 ATGGGATCCAATAGTAGCAAAGCCACTTCCACTACTTCGTCTTCTTCAAGGAATTTCAAGAAGAGTTGTTCTAAGGGATTCAAAGGGTTTCACTCTTATTGTCTTGGAACTTTTTCTGGATCTCAAGATAGTGATAATGAAGACAAGGTTTGTGATCAGAATAAAGTACATGGCTGTGATGTTACATATGTTGATGACAATCTATCTGAATCAGATGAGGTGAAATCAAAGTCTTTTGGAAAGGTTAAAGCCGGTGATAGTGACACTACTTGTATGCCTAACATCAACCTCGATGAGTGCGGTGAAACAAGGATCCCCAACAACGCTTTTTCTGGAAGTCGTACCAGTTCTGTTCACACTTCTTCAACTCATTTGTTGAATGCTACTAATCGATTCCTTTCTTGGTTCGGCATCAGTCCTAGTAATAAAACCTTCAGACTTGGTAGATTTATTGGTTCGAGGTCATCAAGGCATTGTCCTGTTTCTTCTACAAGTCTCTCAGTATTTGACAATGATGCTGATCTTAATCTACATCCGGGACCTTGTAGCAGTTTGTTTAACAGAAATGAAACTCCGCGGTGTCATGAAGATACTCCTAATAATTTAAGGTCAAATGTGTCGGGATCAGGTTTGCCTTGCAACATGCAGCACAATCTCAGCGGTGGCATTGGTGCAAGAGATGAGTTGGATGTAAACTTATTTTCTTCGAGAGTTCGTGCGGAGACAGAACATATTGAGACTAGACATATAGATCGACGAAACGGAGCTCGAGAGCCAGTTGAGCAGAATGTTCGTTTTAGTCGAACTTTAAGTGTTGGAAGGCTTCGTGACCGGGTTCTTCGTCGATCAACATTATCCAACCTTACCTTTTTCCCTTTACAACAAGAGAGAGAACTGAGAGATGATAGTCAGAATACTCAAAGGCAAGAAGTGGAGGCGGATTCAAGAGTGTCACCATTGGAGCATAGCGATGTTAGTTCTTCTACTTCTAGATATTCTCCATCTAGTATGTCTAACTCCATGTTTAGCAATCAAAACTATGACGTTGAGACCTCACGATTACGAGAAGGTAGGTATCAAGATCTACTGGAGCATAGGTCCAATTTCCTTGAACGGAGAAGAAGAATACGGTCACAGGTTCGTTCTCTTCAGCGGTTGGGTAGCCGGTATGAAAATCAATCTGCACATGAGAGATCATGTATCTTGTCTGGTCAACATAGAAGTGCTCGTTGTATGTGCCGATTAAGAAATCGTGACAATAATTCAAATGATGATACCGGTGCTAGAGCTAGTATATCAAGAATTGTTGTACTTGCAGAAGCCTTATTTGAGGTTCTAGACGAAATTCACCAGCAATCTGTGGTTTTATCTTCCCATCCTTCTGTATCTTCTATTGGATCTGTTCCCGCACCTATCAGCGTTGTGGAATCATTGCCTGTCAAGTTATATGAGAAGTTGCATAAAGAAGATACTACACAATGCTATATATGCCTTGGGGAGTATGAGGATGGAGACAGCGTGCGAGTTCTGCCTTGTCATCATGAATTTCATAAAACATGTATAGACAAGTGGTTGAAGGAGATTCACAGGGTATGCCCACTTTGTCGGGGGAATATCTGCATTTCTGGCTCACCGGCAACTCGGAACTTTAGCGACTAG 1659 0.4159 MGSNSSKATSTTSSSSRNFKKSCSKGFKGFHSYCLGTFSGSQDSDNEDKVCDQNKVHGCDVTYVDDNLSESDEVKSKSFGKVKAGDSDTTCMPNINLDECGETRIPNNAFSGSRTSSVHTSSTHLLNATNRFLSWFGISPSNKTFRLGRFIGSRSSRHCPVSSTSLSVFDNDADLNLHPGPCSSLFNRNETPRCHEDTPNNLRSNVSGSGLPCNMQHNLSGGIGARDELDVNLFSSRVRAETEHIETRHIDRRNGAREPVEQNVRFSRTLSVGRLRDRVLRRSTLSNLTFFPLQQERELRDDSQNTQRQEVEADSRVSPLEHSDVSSSTSRYSPSSMSNSMFSNQNYDVETSRLREGRYQDLLEHRSNFLERRRRIRSQVRSLQRLGSRYENQSAHERSCILSGQHRSARCMCRLRNRDNNSNDDTGARASISRIVVLAEALFEVLDEIHQQSVVLSSHPSVSSIGSVPAPISVVESLPVKLYEKLHKEDTTQCYICLGEYEDGDSVRVLPCHHEFHKTCIDKWLKEIHRVCPLCRGNICISGSPATRNFSD 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02439 552 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g02439 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 460 540 IPR013083 -
Trre15g02439 552 MobiDBLite consensus disorder prediction 320 344 - -
Trre15g02439 552 SMART ring_2 494 535 IPR001841 -
Trre15g02439 552 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 547 - -
Trre15g02439 552 MobiDBLite consensus disorder prediction 298 344 - -
Trre15g02439 552 FunFam Putative RING zinc finger domain superfamily protein 465 541 - -
Trre15g02439 552 SUPERFAMILY RING/U-box 474 541 - -
Trre15g02439 552 ProSiteProfiles Zinc finger RING-type profile. 494 536 IPR001841 -
Trre15g02439 552 Pfam Ring finger domain 493 536 IPR001841 -
Trre15g02439 552 MobiDBLite consensus disorder prediction 298 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02439 Trre-Chr15 20252163 20255512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02439 230 540 C3H Transcription Factor Family AT5G45290 60.063 3.20e-109 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02439 - - cam:101492704 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02439 15 20252163 20255512 Trre15g02439 15 20252163 20255512 ECH
Trre9g01585 9 13823976 13827552 Trre15g02439 15 20252163 20255512 PCT