Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02429 ATGGCTGACAATGGAGATAATCAACCTTTGTTCAGTACCAAATTTGGTGTGATACTAATTGCTATGGGTTCAGCTAGTTTTGTGGTAACAATGTACCATCTCATAGTCATTTGCTGCCAAAACTCAGCCGAACGTGCGCAGCAACACGACCGACCAGCAACACAAACACCGAGCGTCGAAGAGGATTGTTTGGGGTCACATCAAATTCCATCCCACAAGTATGAGAAGAAAAAGAATGATGAAGATGATTGTGTTACTTGTGCTGTATGCTTGGGAGACTTTGAGGAGGGTGAGGACTTAAGAACTATGCCTTCTTGCATGCATTCTTTCCATGTACCATGCATAGATATGTGGCTCATTTCACATTTTAATTGTCCCGTTTGTCGCACTGATGCCACGCCTTCTCCGGTGGTGTCTCACAGTTTACCGGAGGTTGCATCCGCTGAGGTGAATGTTGATCAAGGCATAAATATTGTGCAAATAGTTGTCATCCAAAATGAGTTACCGATAGTTCCATCCTAA 522 0.4349 MADNGDNQPLFSTKFGVILIAMGSASFVVTMYHLIVICCQNSAERAQQHDRPATQTPSVEEDCLGSHQIPSHKYEKKKNDEDDCVTCAVCLGDFEEGEDLRTMPSCMHSFHVPCIDMWLISHFNCPVCRTDATPSPVVSHSLPEVASAEVNVDQGINIVQIVVIQNELPIVPS 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02429 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
Trre15g02429 173 SUPERFAMILY RING/U-box 68 135 - -
Trre15g02429 173 CDD RING-H2_EL5-like 87 129 - -
Trre15g02429 173 SMART ring_2 87 128 IPR001841 -
Trre15g02429 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 132 IPR044675 -
Trre15g02429 173 Pfam Ring finger domain 86 129 IPR001841 -
Trre15g02429 173 ProSiteProfiles Zinc finger RING-type profile. 87 129 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02429 Trre-Chr15 20183063 20183584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02429 17 151 C3H Transcription Factor Family AT5G17600 35.526 6.37e-19 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02429 - - lja:Lj0g3v0111029.1 174.481