Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02428 ATGGAGTCTAATGGTGATGCATCGGTTCGTGAATTTTGTGCAAATGGAACATGCATGAAAACAGCAGAAGTTGAAGCTAAACTCGATCAAGGAAATATTCAAGATGCTGAAACTGCATTAAGAGATGGTTTATCTCTTACTTCTGAGGAAGCAAGAGCTCTTCTCGGAAAATTAGAGTATCAAAGAGGTAATGTTGAAGGTGCTCTTCGTGTGTTTGATGGGGTTGATCTTAAAGCTGCCATACAGCGACTGCAAACTTCCCTTTCGGAAAAGCCACCCGTCAAGAAAGGTCCCGCTCGTGCCGAATCACCTTCTTCAGTAACTCAGCATGCTGCTAGTATGGTGCTTGAAGCCATCTATTTAAAAGCCAAGACCCTACAAAAACTGGGGAGATATAACGAAGCGGCTACTGAATGCAAGCAAGTTCTTGATGCTGTTGAGAAGGTATTTTCTCAAGGTATACCTGAAACTCAAGTGGACAATAGATTGCAGGAGATAGTGAGCTGTGCAGTAGAGCTCCTTCCAGAGCTTTGGAAACAGGCTGGTTGCTATTCCGAGGCAATAGCGGCTTACAGGCACGCCCTTCTCAGTCAATGGAACCTTGATAACGATTGCTGTGCGAGAATTCAGAAAGCTTTTGCAGCATTTTTGCTATATAGTGGGGTGGAGGCAAGTCCACCTAGTTTTTCTGTTCAGATTGAAGGGTCTTATGTACCTAAAAATAATATCGAAGAGGCGATTCTTCTTCTTATGATTATTTTGAGGAAGTGTAGCCTAGGAAAAGCAAAATGGGATCCTTCTGTTATGGAACACCTAACTTTTGCACTTTCGATGTGTGGTGAAACTTCTATTTTGGCGAAACAATTTCAAGAGTTGATGCCTGGCGTATATCATCGAATTGACCGTTGGAATTCTTTAGCTCTATGTCTTAGTGGTGCTGGACAAAATAAAAATGCTTTGAATCTGCTAAGGAAGTCTTTGCACAAACATGAACGACCGGATGACTTGATAGCCTTATTATTGGCTGCAAAGATTTGCAGTGAGGATCCTTATCTTGGTGCTGAGGGAGCAGGATATGCACAGAGGGCAATCGATAAAGCTCAAGGCTTAAATGAGCATTTGAAAGGCGTTGGTCTTCGAATGCTCGGACTTTGCCTTGGAAAGCAAGCTAAGGTTGCTTCCTCCGATTTCGAGAGGTCTATGCTTCAGTCAAAAGCTTTGCAATCACTGGAGGAGGCAGTTAGATTAGAGCAAAACAATTTTGATCTTATTTTTGAATTGGCTATTCAATATGCTGAACACCGAAATTTAGCTGTTGCTTTACGCTATGCTAAGCAGTTCTTCGACAAAACTGGTGGCTCTAAATTGAATGGTTGGAGATTGCTTTCTCTGGTTTTGTCTGCACAGAAAAGATTTTCAGAGGCTGAAGTTGTTACTGATGCTGCTTTAGACGAGACCTCAAAATGGGAGCAAGGTCCTCTGTTCAGGCTAAAAGCCAAGCTGAAGATCGCCGAATTACGACCAATGGATGCTATTGAGATTTACCGGTACCTTCTTGCATTGGTTCAAGCCCAAAAGAAATCCTCTGGACCTCAAACACTTATTTCACAGGACGACGATGATAAAATAAGTGAATTTGATGTTTGGCATGGTCTAGCAAATTTATATACAAGCCTTTCACATTGGAAGGATGCTGAAATCTGTTTGCAAAAGGCTAGAGAGTTGAAGGAATACTCGGCAGCAACAATACAAACCGAAGGTGTGGTGTTTGGCGGTCGTGGACAAAACGATGAAGCTCTAGCGGCTGCTGCTAATGCTGTCCTAGTTGAACCGAGCCATGTTCCAAGCAAGATATTGATGGCTTCTTTGATGCTGAAAAATGGTCCCAGTGCATTACCTGTTTCTAGAAGCATACTTTCTGATGCACTCAGAATAGAACCAACTAACCGCAGTGCTTGGTATTATCTCGGATTAACTCACAAGGATGATGGTCGACTAGCCGATGCTGCTGATTGCTTCCAGGCAGCTGCCATGCTTGAAGAATCTGATCCCATTGAAAGTTTTAGCTCTATGATTTAA 2079 0.4266 MESNGDASVREFCANGTCMKTAEVEAKLDQGNIQDAETALRDGLSLTSEEARALLGKLEYQRGNVEGALRVFDGVDLKAAIQRLQTSLSEKPPVKKGPARAESPSSVTQHAASMVLEAIYLKAKTLQKLGRYNEAATECKQVLDAVEKVFSQGIPETQVDNRLQEIVSCAVELLPELWKQAGCYSEAIAAYRHALLSQWNLDNDCCARIQKAFAAFLLYSGVEASPPSFSVQIEGSYVPKNNIEEAILLLMIILRKCSLGKAKWDPSVMEHLTFALSMCGETSILAKQFQELMPGVYHRIDRWNSLALCLSGAGQNKNALNLLRKSLHKHERPDDLIALLLAAKICSEDPYLGAEGAGYAQRAIDKAQGLNEHLKGVGLRMLGLCLGKQAKVASSDFERSMLQSKALQSLEEAVRLEQNNFDLIFELAIQYAEHRNLAVALRYAKQFFDKTGGSKLNGWRLLSLVLSAQKRFSEAEVVTDAALDETSKWEQGPLFRLKAKLKIAELRPMDAIEIYRYLLALVQAQKKSSGPQTLISQDDDDKISEFDVWHGLANLYTSLSHWKDAEICLQKARELKEYSAATIQTEGVVFGGRGQNDEALAAAANAVLVEPSHVPSKILMASLMLKNGPSALPVSRSILSDALRIEPTNRSAWYYLGLTHKDDGRLADAADCFQAAAMLEESDPIESFSSMI 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02428 692 Gene3D Tetratricopeptide repeat domain 20 204 IPR011990 GO:0005515
Trre15g02428 692 Gene3D Tetratricopeptide repeat domain 240 490 IPR011990 GO:0005515
Trre15g02428 692 Pfam Tetratricopeptide repeat 23 73 - -
Trre15g02428 692 SUPERFAMILY TPR-like 464 680 IPR011990 GO:0005515
Trre15g02428 692 Gene3D Tetratricopeptide repeat domain 491 631 IPR011990 GO:0005515
Trre15g02428 692 ProSiteProfiles TPR repeat profile. 650 683 IPR019734 GO:0005515
Trre15g02428 692 SUPERFAMILY TPR-like 116 448 IPR011990 GO:0005515
Trre15g02428 692 PANTHER PROTEIN NPG1 4 689 IPR043376 -
Trre15g02428 692 Pfam Tetratricopeptide repeat 652 684 IPR019734 GO:0005515
Trre15g02428 692 MobiDBLite consensus disorder prediction 88 107 - -
Trre15g02428 692 Gene3D Tetratricopeptide repeat domain 632 687 IPR011990 GO:0005515
Trre15g02428 692 SMART tpr_5 300 333 IPR019734 GO:0005515
Trre15g02428 692 SMART tpr_5 116 149 IPR019734 GO:0005515
Trre15g02428 692 SMART tpr_5 650 683 IPR019734 GO:0005515
Trre15g02428 692 SMART tpr_5 546 579 IPR019734 GO:0005515
Trre15g02428 692 SMART tpr_5 580 613 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02428 Trre-Chr15 20169510 20173198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02428 2 692 Calmodulin-binding Proteins AT2G43040 69.928 0.0 969
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02428 K21843 - gmx:100811897 1103.97