Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02425 ATGGAGAAAACAAGATCCACAGATCATGTTGTTCTCTTCCTTGACCAACAAAACAACCCTAAGCCTTCCACAATGGAAACTGAAACTCACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACACAGAACCTCATCAAGAGAAGCCCAAACATCCCATAAGAGCAAAAACCCTTAATCGTTTAAGCTTCTCCAAACCCAAATCCAGAATCCTTGAATACAGTCATCCACACCGCAACCAACTACCTACAGCTGAAGAAGAAGAAAACACTCATTTTTCTTCATACAAGATCTCTTCTGACGACGAATATGACAACGAGTATGAATACAAGGAAGAGGAATCAGAGGATGACTACGACGAAGATCCAAAGTTAAAAAACAAAAAGAAAAAATTTAAAGTGAAGTGGAGGCTAGTTTTTGAATGGATACTATTTTTAAACATATTAACATGTTTGCTTTGTTCTCTCATAGCAAAACGCATTAAAAACATGCATCTTTTAGGGTTAGAGGTTTGGAAGTGGTGTTTAATGGCAATGGTCACATTTAGCGGCCGTTTATTTTCAAGTTGGTTAGTTGGTTTCACCGTTTTTTTCATCGAAAGAAACTTCATGTTAAGAGAAAAAGTTTTATATTTCATCTACGGTTTACGAAACAGTATTCGTAATTGTTTATGGTTAGGGCTTGTTTTACTGTCATACTGGAGTGTAGTTTTCGAGGATTTCCAAAAGAAAAACCATAAATTCCTTAACAAAGTGTTTCAAGCACTTGTCGCGGTTTTAATAGGTGCAACAATTTGGCTAGTAAAAATTGTTTTGGTAAAAATGTTAGCATCTTCATTTCACGTGACAACATACTTTGATAGAATGAAAGAGAGCGTTTTTCATCATTATGTGTTGGATGCATTGTCGGGGCCACCGGTTGAAAATGCAGAAGATATATCGAAAGAGTATCATTTGACGGGATCAAAGACAATGCCCGTGGGTAACGCAAGGTGGAAGAAGATGAAGAGATTTGGTTCGAGGAGGATCGATATGGAGAAGTTGAAGAAACTTAGTATGGAGAGTAATGGTTCAGTTTGGAGTGTTAAAAGGCTTGTTAATTATGTTAGGTCTTCGGGTTTGTCTACTATTTCTAGGACTGTTGATGATTTTGGTAATAGTGAGAGTGAGATTAGTAGTGAATGGGAAGCTAGAAGTTGTGCTCAAAAGATTTTCAACAATGTTGCTAAACCTGGTGCCACGTATATTGAAGAGGAAGATCTCATGAGATTTTTGAAGAGGGTTGAGATACACACCATATTTCCACTCTTTGAAGGTGCTCTTGAAACTGGCAAGATTAGCAGATCCTCATTTAGAAATTGGGTGATTCGAGCATATTATGAAAGAAAAGCACTAGCACAATCACTGAATGATACAAAAACAGCAGTGCAACAACTTCACAAATTAGCAAGTGCATTAGTGAGTGTGATAATAATAATTGTGACACTTTTGGTGATGGAAGTTGCTACAATGAAGATAATATTGTTTTGCATCACACAAACTGTTCTAATAGGTGTTGCCTTTCAAGGCACTTGCAAAACTGTCTTGGAAGCTATTATCTTTGTGTTTATCATGCACCCTTTTGATATTGGTGACCGTTGTGTCATTGATGGTGTTCAGATGATTGTGGAAGAAATGAATATCTTGACAACAGTGTTTCTTCGATATGACAATGAAAAAATATACTACCCTAATGCTGTCTTGCTCACTAAGCCAATAAGCAATTTTTATAGGAGTCCAGAGATGTGTGATGCAATTGATTTCACCATTGATGTCACAACTCCTATAGAGACTATCATTACACTCAAGAAATCAATAAAAATGTACATTGAGAGCAAACCAAAGTATTGGAATCCAAAGCACAGTGTGATGGCAAAACAAATAGATCATGTGGACAAGTTAAGGTTGTGTTTATGTGTGCAACACACCATTAACCATCAAAACTATGGTGAGAGAAGCACTAGAATATCAGAGCTCATCTTGGAGTTAAAAAAGATGTTTGAGATTCATGGTATCAAGTACCATCTTCTTCCTCAAGAAATCCATCTCACTCAAATGAATATTGAAAATGGGAGAACCATGTTTCAATCATGA 2178 0.365 MEKTRSTDHVVLFLDQQNNPKPSTMETETHNNNNNNNNNNNNNNNNNNNNNNNNNNNTEPHQEKPKHPIRAKTLNRLSFSKPKSRILEYSHPHRNQLPTAEEEENTHFSSYKISSDDEYDNEYEYKEEESEDDYDEDPKLKNKKKKFKVKWRLVFEWILFLNILTCLLCSLIAKRIKNMHLLGLEVWKWCLMAMVTFSGRLFSSWLVGFTVFFIERNFMLREKVLYFIYGLRNSIRNCLWLGLVLLSYWSVVFEDFQKKNHKFLNKVFQALVAVLIGATIWLVKIVLVKMLASSFHVTTYFDRMKESVFHHYVLDALSGPPVENAEDISKEYHLTGSKTMPVGNARWKKMKRFGSRRIDMEKLKKLSMESNGSVWSVKRLVNYVRSSGLSTISRTVDDFGNSESEISSEWEARSCAQKIFNNVAKPGATYIEEEDLMRFLKRVEIHTIFPLFEGALETGKISRSSFRNWVIRAYYERKALAQSLNDTKTAVQQLHKLASALVSVIIIIVTLLVMEVATMKIILFCITQTVLIGVAFQGTCKTVLEAIIFVFIMHPFDIGDRCVIDGVQMIVEEMNILTTVFLRYDNEKIYYPNAVLLTKPISNFYRSPEMCDAIDFTIDVTTPIETIITLKKSIKMYIESKPKYWNPKHSVMAKQIDHVDKLRLCLCVQHTINHQNYGERSTRISELILELKKMFEIHGIKYHLLPQEIHLTQMNIENGRTMFQS 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02425 725 MobiDBLite consensus disorder prediction 1 138 - -
Trre15g02425 725 MobiDBLite consensus disorder prediction 10 59 - -
Trre15g02425 725 FunFam Predicted mechanosensitive ion channel 555 604 - -
Trre15g02425 725 PIRSF Memb_At2g17000 2 724 IPR016688 -
Trre15g02425 725 Pfam Mechanosensitive ion channel 496 701 IPR006685 GO:0016020|GO:0055085
Trre15g02425 725 MobiDBLite consensus disorder prediction 86 119 - -
Trre15g02425 725 MobiDBLite consensus disorder prediction 120 135 - -
Trre15g02425 725 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 715 IPR016688 -
Trre15g02425 725 Gene3D - 555 604 IPR023408 -
Trre15g02425 725 SUPERFAMILY Sm-like ribonucleoproteins 546 604 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02425 Trre-Chr15 20106833 20113939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02425 65 715 Mechanosensitive Ion Channel Family AT5G12080 43.294 0.0 550
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02425 K22048 - gmx:100813521 1051.97