Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02423 ATGGGCAGTGATGCATTGAGAAGCAAAGAGTACCGTGCGCTGAAGGATTTAGAATTTAATTTTAATGAATATGATGGAACTTTCTCTTTCTGCTTTTGGATTTATTTGATGAATTCTACTGCATTTCCTGCTATCATTCTTCATCAGATTCACTCTGACATTTCCGAAAGTGGTCCTTTTCTTGTTATTAACGATAATAAGAGAATCAATGTTTTACCAGTTCTTTACTTACACCAAGAAGCTCCTGTGACTTGCTCCGGTCCTTGGACAGAAGTTCCACATGTTACTGTTGATTTTGAGTTTCCTTTGGAAAAATGGGTTCATGTTGGATGTGAGGTTTGTCCAGATTATATTCGGCTTCAAATTAATGGGGACATTGTAGGAGAAAAGTCACTGTCGGAACCCAATTCAAGGAATTTGAAGGATTTACATTTGGCGAATCGTTGTGGAGACATAAGTGGTGTGCAGGGTTATGTCCACAGTTATGAAGGATTCCATACTGTTTCTTCTATAAAAAATCATCATTTAAAGGACCCTCCTCTGAAGTTATCAATAGATGAATCATCTGTCTCTGAGATTGAAGAGGAAAGTGATGGTGTTTGGGGCATTGTTGGTGGCAAAGCATCTTGTCGCAGAAATTTCTCATTAGACGTTGTTTTATCAGATGCATTTGGACAACCTGTAGATAGGGAGGATGAGGTTTTTGCTTCACTTGTGTATGCTGATACGGGGGCTCCAGTGGAGAATACAAGTGAGGACGAAGCACCCCTTTTATGTAGCTATGATGGAATTGAATTTTCTTCCTTTGAAAGACCCAGCAAGTTTGTGTTGGGTCGTGCATCATTTAAGCTCAGGATATCTCAGCTTTCATCCAAGTGTGATAACAGGTTGTTCCTCATCAGATTTTTTGTTCCAAAATTAGGAAATTATCCTTTCCTTCAGACAAATACCCGTCCAATTCGATGCATCTCCAGGAGCCGTAACACAAAATTATCCACTTTGGTGTGGAAAAAGTCAACCTATGCTCTCCAAAGACTCAATTTGTCACAATCTTCAGCAATTGGTGATGTGTCATTGGAACATGTGAATTCTGGTCATGTAGAAAAAACCAACCCACTGATGAAGCGGTTTAGAGTTGGATTTGACAAGATATCTGTATCAGTTAAGGCCGACCCCCCCACCTTAAAGCAACCTGGTGTCAAATGTAATTCTCATGTATGGCCTGCTAATCAGGTTGATAATGGGTTTCGGACAAGCTCGGATGGAAGATCTCTTAACGTTGAAGAAGCAGATGACGCTCCATCTGAATCATCAGAGAGTATAGGGGAGAGAAATTCACCTTCAAACAGTATGGAATGTAGAAGATATCCAATATCTGATATGACCATTTTCAAATACTGCCTGGCAGGATTGGCTGAGAGATCTCAGATGCTTAAAGAAATTGCCACATCTGCTTCTGACAAAGAAATTTTAGAGTTGGCTCATAATGTTTCACACTATTCAGGATGTTCCCACCTTGGAAACCAAATACTAATTGCCAAGAGATTGATAGAGGATGGAACTAATCTTTGGTTGGCAATGTCTCCAAGCAATCACCCTGTTCCTTGGGAGAGTGCAGTGTATGAGATTGAAGAACAATTCATGAAGATTGCTTCTTGTGGGTCAAGATCTCTCTCTCATCAGGACTTTGAGACTCTAAGAAAGATTGCTGGATGTCAAGAGTATTTAACACAAGAAAACTTTGAGAAGTTGTGGTGCTGGTTGTACCCTGTAGCTTGTGTAATATCCAGGGACTGGGTAAATCCTATCTGGAATTCCATTTCACCTAAATGGATTGAAGGATTCATCACCAAGGAGGAAGCAGAAGCTTCACTTCAAGGTCCGACAGGGTTTCAAGAACCTGGTACTTTTATACTTCGGTTCCCCACCTCAAGAAGCTGGCCCCACCCAGATGCTGGTAACCTAATTGTTACTTATGTTGGTAGTGACTACAAACTGCGCCACAGACTACTTTCAACAGATCATATATATGGCTATGATAATCAAAGAATTGATGTAAAACCATTGCAAGATATGCTACTGGCAGAACCTGAGCTGTCCCGGTTGGGAAGGTAA 2115 0.4061 MGSDALRSKEYRALKDLEFNFNEYDGTFSFCFWIYLMNSTAFPAIILHQIHSDISESGPFLVINDNKRINVLPVLYLHQEAPVTCSGPWTEVPHVTVDFEFPLEKWVHVGCEVCPDYIRLQINGDIVGEKSLSEPNSRNLKDLHLANRCGDISGVQGYVHSYEGFHTVSSIKNHHLKDPPLKLSIDESSVSEIEEESDGVWGIVGGKASCRRNFSLDVVLSDAFGQPVDREDEVFASLVYADTGAPVENTSEDEAPLLCSYDGIEFSSFERPSKFVLGRASFKLRISQLSSKCDNRLFLIRFFVPKLGNYPFLQTNTRPIRCISRSRNTKLSTLVWKKSTYALQRLNLSQSSAIGDVSLEHVNSGHVEKTNPLMKRFRVGFDKISVSVKADPPTLKQPGVKCNSHVWPANQVDNGFRTSSDGRSLNVEEADDAPSESSESIGERNSPSNSMECRRYPISDMTIFKYCLAGLAERSQMLKEIATSASDKEILELAHNVSHYSGCSHLGNQILIAKRLIEDGTNLWLAMSPSNHPVPWESAVYEIEEQFMKIASCGSRSLSHQDFETLRKIAGCQEYLTQENFEKLWCWLYPVACVISRDWVNPIWNSISPKWIEGFITKEEAEASLQGPTGFQEPGTFILRFPTSRSWPHPDAGNLIVTYVGSDYKLRHRLLSTDHIYGYDNQRIDVKPLQDMLLAEPELSRLGR 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02423 704 MobiDBLite consensus disorder prediction 411 453 - -
Trre15g02423 704 ProSiteProfiles Src homology 2 (SH2) domain profile. 611 693 IPR000980 -
Trre15g02423 704 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 148 IPR013320 -
Trre15g02423 704 MobiDBLite consensus disorder prediction 439 453 - -
Trre15g02423 704 SUPERFAMILY SH2 domain 606 679 IPR036860 -
Trre15g02423 704 PANTHER SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 10 700 IPR001217 GO:0003700|GO:0006355|GO:0007165
Trre15g02423 704 Gene3D SH2 domain 599 702 IPR036860 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02423 Trre-Chr15 20084040 20093930 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF STAT Trre15g02423 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02423 - - cam:101502730 1138.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre15g02423 15 20084040 20093930 Trre15g02423 15 20084040 20093930 ECH