Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02408 ATGGCCTTGCTTTGTAGTTCACCATCCGTGAAGTTTCCTTCATCTTCATTCTCTCATTACAACAATTCAACAACTAAATTTTCCTTTGTATCTTCCCAATTCCCACTTTCAAAACTTTCATTTTCGTCATCTTCTTCAATTCGTACCCATTTCTCTCCATCTTTCATTGTCCGTTCTCAGCAGGACACTTCCTTGATTGAAGAAGATCCACGCTTCATCTGCGTTGAACCTGAGCCCCGATTTCAAGGCCCGGACATTTGGAACACAACCTGGTATCCAAAAGCTTCAGATCATGTCAATACAGAGAAAACATGGTATATTGTTGATGCTACAGATAAAATTCTTGGAAGACTAGCATCAACCATTGCTAATCACATCCGAGGAAAAAATCTAGTGACTTATACACCCAGTGTGGATATGGGTGCATTTGTAATTGTGATAAATGCAGAAAAGGTTGCTGTAAGTGGGAAAAAGAGGACCCAAAAGCTTTATCGGAGGCACTCAGGTCGACCTGGTGGTATGACAATCGAGACATTTGACCAGCTGCAGAACAGAATTCCTGAAAGAATTATTGAACACGCTGTTCGTGGCATGCTTCCCAAAGGGAGGCTTGGCAGGACTCTTTTCACACGCCTGAAGGTTTATAGCAGCCCAGAACATCCACATGAAGCGCAGCAGCCCATTGATTTGCCAATTAGGGATAAGAGAATACAGTTGCAGAGATAA 726 0.4242 MALLCSSPSVKFPSSSFSHYNNSTTKFSFVSSQFPLSKLSFSSSSSIRTHFSPSFIVRSQQDTSLIEEDPRFICVEPEPRFQGPDIWNTTWYPKASDHVNTEKTWYIVDATDKILGRLASTIANHIRGKNLVTYTPSVDMGAFVIVINAEKVAVSGKKRTQKLYRRHSGRPGGMTIETFDQLQNRIPERIIEHAVRGMLPKGRLGRTLFTRLKVYSSPEHPHEAQQPIDLPIRDKRIQLQR 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02408 241 Gene3D Ribosomal protein L13 94 237 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 SUPERFAMILY Ribosomal protein L13 100 232 IPR036899 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 Hamap 50S ribosomal protein L13 [rplM]. 105 240 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 FunFam 50S ribosomal protein L13 89 232 - -
Trre15g02408 241 Pfam Ribosomal protein L13 103 221 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 NCBIfam 50S ribosomal protein L13 99 230 IPR005823 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 CDD Ribosomal_L13 105 215 IPR005822 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 ProSitePatterns Ribosomal protein L13 signature. 195 217 IPR023563 GO:0003735|GO:0005840|GO:0006412
Trre15g02408 241 PANTHER RIBOSOMAL PROTEIN L13 91 236 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02408 Trre-Chr15 19930994 19935227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02408 107 240 Cytoplasmic Ribosomal Protein Gene Family AT3G07110 29.630 2.37e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02408 K02871 - gmx:100305981 338.576