Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02402 ATGCAAACGATCATGGATCCAACCAAAAAGCGCAAGCTTGGCGAGAACGGCTTCGGTGGAGAAGCTGATCACCTAAAGCTCTCTCCGTCGGAAGCCCGTAAGGTCATCGAGAGGTTCACCCCTGACCAGCTAATCAACATCCTCCAAGACGCCATCATCCGCCATCCCGACGTTCTCTCCGCCGCTCGTGCAATTGCAGACACTGACATCTCCCAACGGAAACTCTTCATCCGCGGCCTTGGTTGGGAAACCACTACCGAAGGTCTCCGTTCACTCTTTTCAACCTACGGTGAACTTGAAGAAGCCATCGTCATCCTCGATAAGGTCACCGGGAAGTCAAAGGGTTACGGCTTTGTCACCTTCCGCCACGTAGACGGAGCTCTACTCGCACTCCGTGAACCTAGCAAGCGCATCGATGGGCGCGTAACTGTCACGCAGCTGGCCGCAGCAGGGAATTCAGGCTCAAACACAAACGCAGCTGACATTGCGCTCCGCAAAATATATGTATCGAACGTGCCACCGGATCTGGCAGGAGATAAGCTTCTAGCTCATTTCTCAATTTATGGAGAGATTGAGGAGGGTCCTTTGGGATTTGATAAACAGACAGGAAGGTCGAAAGGGTTTGCGCTTTTCGTTTATAAGACACCGGAGGGGGCACAGGCTGCACTATTGGAGCCAGTCAAGAATGTAGAGGGGCGGCAGTTAAATTGCAAGCTGGCAATAACAGATGGGGGGAAACAGCAAGGGATGCGTGGTGGACCGGACGGGGTTCAAGGTCGTGGGAATGCTCATGGAAACGGAATGGGGATGGCTTCTGCACCTGGGCCTGGGGCGGGTCAGTACAGTGGTTCTGTTGGTATTGGTTCTTATGGAGGGTTTTCTGGTGGACATCAGAGTCAGCCTCCAATGGGTAACCATCCTCTGAATTCGTCTGTTGGTGGTGGTTTGTCATCTGTGGGGAATCAGGCTCCGTCTTCAATGGGTGGTACTGGAGGATATGGTGGTGGTCATTATGGAGGTTATGGTGGGCCTGCTGCAACAGGTTTTGGTGGTAGTGGTGGTGGAGGCGGTTATGGAGGAGGAGGTAGTGGTGTGACCGGTGCTGGTGCGGGTACTGGTGGTGGACTTGGCTCTGGTGGAGGTAGTGTTGGACTTGCTTCCTTGTATAGATTACCAAGTTCAGGTGGAATGCAAGCTGGTGGCTTCGCCCGTACCAAGGGTTCAACCTGGTTCCATGTATCCAAATGTGCCCCCTTACTACTAAGGTGTATCATTGCTTGTTGGGCGCAGATCTTTGTGTGCTTCTGGTGA 1311 0.5309 MQTIMDPTKKRKLGENGFGGEADHLKLSPSEARKVIERFTPDQLINILQDAIIRHPDVLSAARAIADTDISQRKLFIRGLGWETTTEGLRSLFSTYGELEEAIVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADIALRKIYVSNVPPDLAGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGGKQQGMRGGPDGVQGRGNAHGNGMGMASAPGPGAGQYSGSVGIGSYGGFSGGHQSQPPMGNHPLNSSVGGGLSSVGNQAPSSMGGTGGYGGGHYGGYGGPAATGFGGSGGGGGYGGGGSGVTGAGAGTGGGLGSGGGSVGLASLYRLPSSGGMQAGGFARTKGSTWFHVSKCAPLLLRCIIACWAQIFVCFW 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02402 436 SUPERFAMILY RNA-binding domain, RBD 158 267 IPR035979 GO:0003676
Trre15g02402 436 FunFam UBP1-associated protein 2C isoform A 56 159 - -
Trre15g02402 436 PANTHER GEO13361P1-RELATED 56 354 - -
Trre15g02402 436 SMART rrm1_1 74 146 IPR000504 GO:0003723
Trre15g02402 436 SMART rrm1_1 166 238 IPR000504 GO:0003723
Trre15g02402 436 Gene3D - 155 275 IPR012677 -
Trre15g02402 436 SUPERFAMILY RNA-binding domain, RBD 65 150 IPR035979 GO:0003676
Trre15g02402 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Trre15g02402 436 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Trre15g02402 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Trre15g02402 436 MobiDBLite consensus disorder prediction 292 328 - -
Trre15g02402 436 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Trre15g02402 436 MobiDBLite consensus disorder prediction 245 277 - -
Trre15g02402 436 Gene3D - 54 154 IPR012677 -
Trre15g02402 436 MobiDBLite consensus disorder prediction 293 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02402 Trre-Chr15 19836972 19839518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02402 161 250 C2H2 Transcription Factor Family AT2G19380 40.860 2.00e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02402 K12741 - zju:107432547 440.654