Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02397 ATGGCTGACGTTCTTTCACAAAAGATCAAAACACCTACAAGCACCAACAAGAAGGAATCATCAAATCCTTTACTGGGTCGATTCGAAATTGAGAAACTTCTTGGTTATGGAACATTTGCTAAGGTTTATTATGTCAGGAACATCAAAACTGGTGAAGTTGTTGCAATCAAAGTCATTGACAAGGAGAAGATTCTGAAGGGAGGTTTAGTTGCTCATATCAAACGTGAGATCTCGATTCTTCGTCGTATTCGTCATCCTAATATTGTTCAATTGTTTGAGGTAATGACTACTAAAACAAAGATCTAA 306 0.366 MADVLSQKIKTPTSTNKKESSNPLLGRFEIEKLLGYGTFAKVYYVRNIKTGEVVAIKVIDKEKILKGGLVAHIKREISILRRIRHPNIVQLFEVMTTKTKI 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02397 101 SUPERFAMILY Protein kinase-like (PK-like) 23 98 IPR011009 -
Trre15g02397 101 FunFam Aurora kinase A 20 101 - -
Trre15g02397 101 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trre15g02397 101 Pfam Protein kinase domain 28 100 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02397 101 ProSiteProfiles Protein kinase domain profile. 28 101 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02397 101 MobiDBLite consensus disorder prediction 1 21 - -
Trre15g02397 101 MobiDBLite consensus disorder prediction 7 21 - -
Trre15g02397 101 Gene3D Phosphorylase Kinase; domain 1 16 101 - -
Trre15g02397 101 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 15 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02397 Trre-Chr15 19804378 19804683 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02397 5 101 CBL-interacting serine-threonine protein kinases AT4G18700 71.000 1.46e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre15g02397 Pkinase 7.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02397 - - gmx:100814720 159.073