Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02396 ATGGCATCTCAGAAGAAGAGACACCATGACTGCGAGATAGCAGTGGAGGCAAAAATGGCGGCGAACAACACTGTGAAAAACCTGGAAGAAGATAAACACAATAAGGGTCTGAGTCTGGATCCTCCCAGAACAAATCACCATCCTCTTTATCACCATCCTCAACAACAACAAGACCCTCACCACCATAATAATGATGAAGAAGAAAATGATGAACATAACTCTTCTCCTTCTTCTGGAAACCCCAATCCTCACTATCATCAACAAAATTCTTCTACCTTTCATTTTCATCACCACCCATATTTTCAACAGCATATAGATTTAGAGTCGGAACAAGAGCCACTTCAACAAACAAAGAAATGGTCTTCTTTCCTTCCACCACCACACCCTAATCAACAACCACCACCAACAACAACAACAACAACAGCAACACCGTCATCTTCGTCGTCGTCGTTTTATTCCATCGAATATGCAAGAAAGATGGGAGAACCAACACAAGACCATCACCACACAGGAGCAGCAGCAACAGCAACAGCAGCAGCAACAAAACCAGCAGCAACCTCGTCTAAGAGAATTGCAGGAGAAATCGTTGAAGTGCAAGGAGGTCACATTGTACGGTCAACAGGACGGAAAGACCGTCACAGTAAAGTATGCACGGCGAAAGGTCCACGTGACCGCCGTGTACGACTCTCGGCCCACACGGCGATCCAATTCTACGACGTGCAAGATCGTTTGGGCTACGACCGCCCTAGTAAGGCAGTCGATTGGCTTATCAAAAAAGCCAAATCCGCCATCGACGAACTCGCTCAGCTTCCGGCATGGAACCCCACCGCCACATGTTCTACAACACCACCTCAAAACCAGCAGCAACAACAGCAGCAGCAACAAACAAACGAAATGTTCAACCGGCAATCTCCGGTGGACAACCATCCAGTAACCGCTTCCACCAGTCACCGCTCGGCAGCGGCATTAGAGCGAAGAATGCCACCACAACAACAAGAACAATTTTCTTCGCAGCAACTAGAGTTAGACTATAACAATAGTAGCAGCGGGAAACATGGTTTTCTTCAAGGCTCATTGGATACTGACATTGCGGATACTATAAAATCTTTTTTTCCGGTTGAAACGCAGACGACGTCGTTTCACAGTTATCCACAACCGCCGGATTTGCTTTCTCGAACCGCGGCAACTGCCCAGCAGCAAGATCTCCGCCTCTCATTGCAATCTTTTCAAGATCCTATTCTGCTTCAGAGCCACCATGACAACCACCATCACCACCACCACCACAACCAAGTGCTTTTTGCCGGAAACTCCTCGCTCGGCGGATACGACGGTGGTGGAAGTGGAACCAACTTGTTGTCTGAGCAGCAGCACCAGCAACAAGAGGAAAATGACAATGATGGTGGTAACAGTGGCAATTGTGCGGGATTTGTGTTCAACGCACCCGCTGCTCCATCGTTCGGCGGTTATGGCCAGTTTTTTACTCAGAGGGGACCCCTTCAGTCCAGTTACAATCCTTCAGTTCGTGCTTGGATAGATCCTTCCATGGCGGCAACGGCTAATATAGCCGATCACCATCATCACTATCTTTCGCCGATGATCCATCAGGCTTCTGTCTCTGGTGGTGGATTCTCAGGCTTTCGTATACCAGCACGAATTCAGGGTGAAGAGGAACATGACGGCGTATCTGATAAACCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1725 0.4817 MASQKKRHHDCEIAVEAKMAANNTVKNLEEDKHNKGLSLDPPRTNHHPLYHHPQQQQDPHHHNNDEEENDEHNSSPSSGNPNPHYHQQNSSTFHFHHHPYFQQHIDLESEQEPLQQTKKWSSFLPPPHPNQQPPPTTTTTTATPSSSSSSFYSIEYARKMGEPTQDHHHTGAAATATAAATKPAATSSKRIAGEIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLPAWNPTATCSTTPPQNQQQQQQQQQTNEMFNRQSPVDNHPVTASTSHRSAAALERRMPPQQQEQFSSQQLELDYNNSSSGKHGFLQGSLDTDIADTIKSFFPVETQTTSFHSYPQPPDLLSRTAATAQQQDLRLSLQSFQDPILLQSHHDNHHHHHHHNQVLFAGNSSLGGYDGGGSGTNLLSEQQHQQQEENDNDGGNSGNCAGFVFNAPAAPSFGGYGQFFTQRGPLQSSYNPSVRAWIDPSMAATANIADHHHHYLSPMIHQASVSGGGFSGFRIPARIQGEEEHDGVSDKPSSASSDSRH 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02396 574 MobiDBLite consensus disorder prediction 329 349 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 74 91 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 275 319 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 163 187 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 112 149 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 275 349 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 552 574 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 24 91 - -
Trre15g02396 574 Pfam TCP family transcription factor 208 323 IPR017887 -
Trre15g02396 574 MobiDBLite consensus disorder prediction 25 40 - -
Trre15g02396 574 ProSiteProfiles TCP domain profile. 209 267 IPR017887 -
Trre15g02396 574 Coils Coil 11 31 - -
Trre15g02396 574 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 130 500 IPR005333 GO:0003700
Trre15g02396 574 MobiDBLite consensus disorder prediction 444 472 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 53 73 - -
Trre15g02396 574 MobiDBLite consensus disorder prediction 135 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02396 Trre-Chr15 19786035 19789766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02396 192 574 TCP Transcription Factor Family AT3G15030 46.512 4.21e-86 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Trre15g02396 TCP 2.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02396 - - mtr:25502512 578.941