Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02392 ATGGAAGCTAGGAGTATTGAGAGGAGGAGAACATTGATGATGGAAAAGGTCAGAAGGAACAACACAGTGGAAGAAGAAGTGGAAAATGAAGTAGAAGAAGAAGATGGTGATTTTAGTCTGACCGAAGAAGAGAAGAAGAAAGGGGCCGGTGGTGGAAGAAGAGGTGGCGGCGGTGGTGGTGTTTCTCCACCTTCCTGCCAAGCAGAGAGGTGTGGAGCTGATTTAACCGATGCAAAGAGATACCATCGTCGCCATAAGGTGTGTGAGTTTCATTCTAAGGCACCTGTTGTGGTGGTTTCAGGGCTGAGGCAGAGGTTTTGCCAACAATGTAGCAGGTTCCATGACCTAGCAGAGTTCGATGAATCTAAAAGAAGCTGTCGCAGGCGGTTGGCTGGACACAATGAAAGGCGCCGGAAAACTAACCCGGAAACTGCTAATGAAGGCAGCAGCCACAGCAAAGGACAACAACATCAACCTAAGGACACACAGTGCAGAATTCAGATGAACTTACCAGGGAGTTCTGGCTACAAGTCATTCAATATTAGGTGA 549 0.4772 MEARSIERRRTLMMEKVRRNNTVEEEVENEVEEEDGDFSLTEEEKKKGAGGGRRGGGGGGVSPPSCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVSGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNPETANEGSSHSKGQQHQPKDTQCRIQMNLPGSSGYKSFNIR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02392 182 MobiDBLite consensus disorder prediction 130 182 - -
Trre15g02392 182 FunFam Squamosa promoter-binding-like protein 14 58 127 - -
Trre15g02392 182 MobiDBLite consensus disorder prediction 19 67 - -
Trre15g02392 182 SUPERFAMILY SBT domain 64 144 IPR036893 GO:0003677|GO:0005634
Trre15g02392 182 Coils Coil 13 34 - -
Trre15g02392 182 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 158 IPR044817 GO:0003677
Trre15g02392 182 ProSiteProfiles Zinc finger SBP-type profile. 63 140 IPR004333 GO:0003677
Trre15g02392 182 Pfam SBP domain 66 139 IPR004333 GO:0003677
Trre15g02392 182 Gene3D - 57 127 IPR036893 GO:0003677|GO:0005634
Trre15g02392 182 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02392 Trre-Chr15 19753150 19754296 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02392 9 182 SBP-box Gene Family AT3G15270 47.458 4.40e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Trre15g02392 SBP 9.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02392 - - aprc:113864686 250.366