Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02357 ATGCAAGAAACTATCATCGTATCGTGGCTTTTTCAAATGGATGTTCCTCAAGATGCTTTTAAGTTGGTAGTGGCAAAAATATTGGAATGTGCTCGTGATATGGTTAGCACACATAAGAATTTAAGGGTACTTCCTATTCGGGTCAATCTTGTCGTTACAAGGGCTAGCGAAGATGAAAGTGATGAAGATGATGATGAGAGAAGTGATGAATGTATTGAAAGCGATGAAGCGGAAAAGTCATGTGTTGAGGGATCAGAGACCGTGAATGTTGAAATAGAGAAAAACTGTGCAATCTGTTTTGAAAATTTTGATTTTAATGTTGGAGTTCCTATGCCATGTATGCACGTGTTTCATATAAAATGTATCCGTGATTGGTTAGAGAAAGGCAATACTTGTCCTTTGTGTAGGTTTAAATTGCCCACGAATTAA 429 0.373 MQETIIVSWLFQMDVPQDAFKLVVAKILECARDMVSTHKNLRVLPIRVNLVVTRASEDESDEDDDERSDECIESDEAEKSCVEGSETVNVEIEKNCAICFENFDFNVGVPMPCMHVFHIKCIRDWLEKGNTCPLCRFKLPTN 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02357 142 MobiDBLite consensus disorder prediction 57 72 - -
Trre15g02357 142 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 139 IPR013083 -
Trre15g02357 142 ProSiteProfiles Zinc finger RING-type profile. 96 136 IPR001841 -
Trre15g02357 142 SMART ring_2 96 135 IPR001841 -
Trre15g02357 142 SUPERFAMILY RING/U-box 95 140 - -
Trre15g02357 142 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 64 140 - -
Trre15g02357 142 MobiDBLite consensus disorder prediction 55 78 - -
Trre15g02357 142 Pfam Ring finger domain 95 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02357 Trre-Chr15 19426378 19426806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02357 65 142 C3H Transcription Factor Family AT5G01980 37.363 3.20e-12 60.8