Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02355 ATGGAATCTACATGCTTTGGTTCTAATGAGGAAGTCGCACTAAAGCAAAAATGGAAATCCACTACAGAAGAGACAACAATATCTAGTAGTGAGAATGGTTGCTTCGATTGTAATATTTGCTTAGAATCAGCTCATGATCCTGTGGTTACACTCTGTGGTCACCTGTATTGTTGGCCATGTATATACAAGTGGCTCAATGTCCAAACCTCTTCTGTTGAACCGGATAAGCAGCCAACATGTCCAGTTTGTAAAGCTGAGATCTCCCATGCTTCATTAGTCCCACTTTACGGCCGAGGAAAATCTAATTCCGAAACTGAAACCAAGAAACTCCAGGTAGGTTTAGGTATACCTCATAGACCACCTCCGTACAACTTGAATGCTATGTTAACTTCTAATCGTGCATCAAATTCACATCACGATGAGCAACTCCGTCCAAATTATTTCCAGTCACAATCCCGGCCGATTCATTATCAGCACTACATCCCTCACCTTTATGGTGGTTATGGTGCCAATGGATTACCTTATCTAGGTGGTGCTGCTATGACCAGTTTCTTCGATCCCGTGGTCGGTTTGTTTGGTGAGATGGTGTTGACAAGGATTTTCGGTGTCTCTGATGCAAATGTGTTTGCTTACCCTCAAAATGGAAGCACCAGTCCTAGAATGAGGAGACAGGAGATGCAGATTGACAAGTCTTTAAACAGAGTTTCTATCTTTCTTCTTTGTTGTTTCATTTTGTGTCTTCTCTTGTTCTGA 753 0.4197 MESTCFGSNEEVALKQKWKSTTEETTISSSENGCFDCNICLESAHDPVVTLCGHLYCWPCIYKWLNVQTSSVEPDKQPTCPVCKAEISHASLVPLYGRGKSNSETETKKLQVGLGIPHRPPPYNLNAMLTSNRASNSHHDEQLRPNYFQSQSRPIHYQHYIPHLYGGYGANGLPYLGGAAMTSFFDPVVGLFGEMVLTRIFGVSDANVFAYPQNGSTSPRMRRQEMQIDKSLNRVSIFLLCCFILCLLLF 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02355 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 153 IPR013083 -
Trre15g02355 250 Pfam Zinc finger, C3HC4 type (RING finger) 37 83 IPR018957 GO:0046872
Trre15g02355 250 SUPERFAMILY RING/U-box 34 96 - -
Trre15g02355 250 ProSitePatterns Zinc finger RING-type signature. 52 61 IPR017907 -
Trre15g02355 250 FunFam E3 ubiquitin-protein ligase RMA1H1 10 104 - -
Trre15g02355 250 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 10 247 IPR045103 GO:0005783|GO:0006511|GO:0061630
Trre15g02355 250 ProSiteProfiles Zinc finger RING-type profile. 37 84 IPR001841 -
Trre15g02355 250 CDD RING-HC_AtRMA-like 35 85 - -
Trre15g02355 250 SMART ring_2 37 83 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02355 Trre-Chr15 19416487 19417239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02355 15 236 C3H Transcription Factor Family AT4G27470 49.339 1.75e-56 179