Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02328 ATGGTAATGCCAAAAATTCCAAAATATACACCTTTTCTTCTTATTCTTTTACTATTCGCAGTGTCTAACGAATCATTTGCCTCATCATTCACTCCCGTTGATAATTATTTGGTCGCTTGTGGTTCATCCAACGATATCAATTTTCAGGGTCGAACTTTCATACCTCAATTTAAATTTAATCATTCCAACCTTCAAATAATAGTCAACAAATCTATTGCAGTTACCTCTAAACTCAACAGTACACTTTCACCACTCTATAACTCAGCTCAACTCTTCTATGAAAAGGCATCATATAAATTCAAAATTCAGCAACATGGGAGACATTGGATCCGTCTCTATTTTCACCCTTTACCCGATTGCAACCCCAACATGACCTTAGCCTCAATAACAGTAATAACTGATGTTATCTCTATCTCAGATGAGCTCTTACTTGACCATATAGTAGTAACACTATATCGATCAGACTTATCTGAACAATTCTCAAAGTCTGCCCTTGAAACAGTGTACAGAGTGAACATTGGAGGTGCAACTTTCAGTGACACCCTTGGAAGGACTTGGGAGAATGATGAACATTACTTCCAGCACCCGATAAACACCGCCAATAGTTCTTATCATATTGTTTCTACAAACCCTTCTGCAATAAAGAATTCTGTTGCTGCTCCACCATCTGTTTATGCCACGGCCAGAGCCTGGAAAATTGCATCACAGTCACACGGATACGATTTAAATTGGATCTTCAATGTAGATCCAGACTTCATGTATTTCGTTCGGGTTCATTTCTGTGACATCATTAACAATTCACTGAACAACAGCATGGTTTTCAATTTAGTTATAAATGGAGCAATTGCTGTTCAAAGTCTTGATCTCTCATCCAAAACCAGAGGACTTGCTGTCCCATATTACTTTGACTTCATCTCCTACTCCTCAAGAAATACTTTCGAAGTGAGTGTAAGTGTTGATCCCCATACAATGGCAGACATGTCAAATGCAATCATGAATGGTGTGGAAATATTGAAAATTAGCAACAGTGCAGGTAGATTGAATGAGTTTTCTTCTTTTCCGGATTTTGATTCTAGCTTACCAGAAAATGAGGCAAGTGTTTCACATTCACCAAAAAAAACTTCGAAAATAAGTAAAAAACTAGGGATTTGGTGGACTGTCATTTTAATTGGTTGCAGTGTGTGTGTATTGGCGTTTCTAGCATTTGGCGGACTATCATTTTGTTACTTGAAAGGCCGCTGGAGGAAGAACAAATCAGTAACTAGTTTTAAGTTTCTGAGACATTATACTTTGCCTGAGATGCAACAAGCAACAAATTTTTTTGATGCTGAGCTGCTTATTGGAGCGGGAGGATTTGGAAAGGTGTATAGAGGAAAACTAGAAAATGGGAAAGTAGTAGCCATCAAAGTAGCAAATCCTGAATCTAGACAAGGTCCCAATGAATTCCATAATGAGATTGAGTTGTTGTATGGTCTTCGTCATCAAAACCTTGTCACTCTTGTAGGTTGTTGTAATGAAGACTCGGAACTTATTCTGGTATACAATTACATGGCGAATGGATCTCTCAGCAAGCATCTATATGGTGGGGACTTTGTTCCTCTATCTTGGAAGCAACGCCTTGGGATATGTTTAGGGGCTGCAAAGGGACTTTTATATCTTCACACAGGAGCTAAACAGACCATAATTCACCGTGATGTGAAGACAACGAACATTCTCTTGGATGAAAATCTTGTGCCAAAAGTTGCTGATTTTGGCATATCAAAAAAGGGTCCTCTTCTTGATAAAAGCCATGTTACAACCAATGTAAAGGGTAGTTTTGGCTATGTTGATCCAGAATATTTTAGGACTAAGTATCTCACTAAGAAATCGGATGTTTACTCATTTGGGGTAGTGTTGATTGAAGTTATATGTGGGAAGCCTGCTTTAGATGATACTCGTACGACGCAGGAGATGAATTTGGCATTGTGGGCATTAAGCTGCCATAAAAAGGGTACTTTTAATGAATTGGTGGACCCATATTTGATTGGCAAAGTTAATATGGATTCTCTAAACAAGGTTTTAGAGTTGGCATGGAAGTGCTTGGAGGAGCGTCGGGTTAACAGACCACCAATGGGTTATGTATTATGTCAACTAGAAGAGGCTCTCCATCTTGAGTTGGCTTCACATGTTTTGAATGACAATGACAATATTAATGGGGATTCTTCTACTCATTCCTGTGTCGGAAATGGATTTACAGATGATATAGAAGCTGTTGTTTGA 2259 0.3847 MVMPKIPKYTPFLLILLLFAVSNESFASSFTPVDNYLVACGSSNDINFQGRTFIPQFKFNHSNLQIIVNKSIAVTSKLNSTLSPLYNSAQLFYEKASYKFKIQQHGRHWIRLYFHPLPDCNPNMTLASITVITDVISISDELLLDHIVVTLYRSDLSEQFSKSALETVYRVNIGGATFSDTLGRTWENDEHYFQHPINTANSSYHIVSTNPSAIKNSVAAPPSVYATARAWKIASQSHGYDLNWIFNVDPDFMYFVRVHFCDIINNSLNNSMVFNLVINGAIAVQSLDLSSKTRGLAVPYYFDFISYSSRNTFEVSVSVDPHTMADMSNAIMNGVEILKISNSAGRLNEFSSFPDFDSSLPENEASVSHSPKKTSKISKKLGIWWTVILIGCSVCVLAFLAFGGLSFCYLKGRWRKNKSVTSFKFLRHYTLPEMQQATNFFDAELLIGAGGFGKVYRGKLENGKVVAIKVANPESRQGPNEFHNEIELLYGLRHQNLVTLVGCCNEDSELILVYNYMANGSLSKHLYGGDFVPLSWKQRLGICLGAAKGLLYLHTGAKQTIIHRDVKTTNILLDENLVPKVADFGISKKGPLLDKSHVTTNVKGSFGYVDPEYFRTKYLTKKSDVYSFGVVLIEVICGKPALDDTRTTQEMNLALWALSCHKKGTFNELVDPYLIGKVNMDSLNKVLELAWKCLEERRVNRPPMGYVLCQLEEALHLELASHVLNDNDNINGDSSTHSCVGNGFTDDIEAVV 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02328 752 Gene3D Phosphorylase Kinase; domain 1 409 516 - -
Trre15g02328 752 CDD STKc_IRAK 447 713 - -
Trre15g02328 752 Gene3D - 35 142 - -
Trre15g02328 752 Gene3D - 163 342 - -
Trre15g02328 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Trre15g02328 752 ProSiteProfiles Protein kinase domain profile. 441 719 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02328 752 Pfam Protein tyrosine and serine/threonine kinase 446 649 IPR001245 GO:0004672|GO:0006468
Trre15g02328 752 FunFam receptor-like protein kinase FERONIA 410 516 - -
Trre15g02328 752 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 246 713 - -
Trre15g02328 752 Pfam Malectin-like domain 158 339 IPR024788 -
Trre15g02328 752 Gene3D Transferase(Phosphotransferase) domain 1 517 734 - -
Trre15g02328 752 SMART serkin_6 441 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02328 752 FunFam Receptor-like protein kinase FERONIA 517 732 - -
Trre15g02328 752 SUPERFAMILY Protein kinase-like (PK-like) 415 711 IPR011009 -
Trre15g02328 752 ProSitePatterns Protein kinases ATP-binding region signature. 447 469 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02328 Trre-Chr15 19275388 19277793 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02328 30 720 Receptor kinase-like Gene Family AT5G59700 40.000 5.87e-166 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Trre15g02328 PK_Tyr_Ser-Thr 7.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02328 - - tpra:123883851 1254.97