Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02319 ATGGTTTTATCAGCTTCGTCATGTTCTCTAACGAGAAGCTCGTTGGAAGAGATGTTAGAATCGCTTCGTCAGATGGATGAGGAACGAGAGAAGAAGAAAGACTTACCTCCGGCGTTGCCATCTCGACCGGCGTCTAAGGCGAGGCTTCCTCCGGCGAGACGGTCTTTGCCGAATAATTTTAAGGTTGGTAGATGTGTTGTGGTGGAGAATGGATTTATTGACAATGTGGAAAGTAAGAGGAAAGAGACATCGACAACATCGACATCAACATTAGAATATTCTGAATATAACTTAAGAGATAGCAGTTTTGGAAGGAAGAGAGTAAAGAAGGATGTTGTGGAGTCACCTTATGTGGCAGCAATTTCAGAATTGGATGATGATACTATTTCTTATTTCATCAAAATGAAGCTTCGCGTTTGGTGTAGGCAACCAAGAGGGCAATGGGAGCTAGGTTCAATACAATCAACTTCGGGAGAAGAAGCTTCCGTTTCACTATCTAATGGAAAAGTGCTGAAAATGTTTAGATCAGAACTCGTACCAGCTAATCCTGATATTTTAGAGGGTGCGGATGACCTTATCAAAATCGCTTATTTGAATGAGCCATCTGTTCTTCACAATCTTAGGTTTAGATATTCCCGGGAGATGATTTATAGTAAAGCAGGTCCTGTTTTAATTGCACTCAATCCTTTCAAAGATCTCCAGATCTATGGAAATAATCATGTCTCCAGTTATAGGCAGCAATCTGTTGATACTCCTCATGTTTATGGTATGGTAGATGCAGCTTATAACCAGATGATGAGAGATGAAGTAAATCAGTCTATTATCATAAGTGGTGACAGTGGATCTGGAAAGACAGAGACAGCTAAAATTGCTATGCAATACTTAGCTGCTCTTGGTAGTAGCAGTTGTGGGCGAGCAAATGATGTTCTTCAGACAAATTGTATACTAGAAGCTTTTGGGAATGCAAAAACATCTGTAAATGACAACTCTAGCAGATTTGGAAAGTTTATTCAAATTTATTTCAGTGCCATGGGTAAAATATGCGGGGCTAAAATTAAAACATGTAAGCTAATTCAAGCTATACATTTTACTACAGATTTGCTTTCAAGAGTTGTTCAAATGGTCAATGGTGAGAGGTCGTATCACGTATTTTATCAACTTTGCGCTGGATCTTCATCTAGTCTTAAAGAGAGACTAAATCTTAGAGCAGCCCATGAATATAAATATTTAAATCAAAGTGACTGCATGACAGTTGGTGGTATTGATGATGCTAAAAAATTTCATCAGCTGAAGAAAGCATTTGATGCTGTTCGAATTTCTAAAGAGGACCAAGACCTGATCTTTAAGATGCTTACTGCAATACTATGGCTGGGAAATATATCATTCAAAGTTATTGACAGTGAAAATCACATTGAGGTTATGAGTGATGAAGCTGTAACCAGTGCTGCCATGCTGATGGGTTGCAGTTCCCAGGAATTAATAACAGCATTATCTACCCATAAAATCCAACCTGGCGAGGACACTGTTGCAAAAAGTTTGACATTATTGCAGGCAATTGAAACAAGAGATGCAATTGCCAAATTTATTTATGCAAGCTTGTTTGAATGGCTTGTACAACAAGTTAACAAGTCACTTGAAGTGGGTGAAAAACACACAGAGAAATTCATTAGTATCCTTGATTTTTATGGGTTTCAGTCATTCCAGAAGAACAACTTTGAACAGTTTTGCATAAATTATGCCAATGAGAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTGTGAATCGGACGGCATTGTTTGTACAGTATTAGATTTTGAGGACAATCAAGAGTGCTTGGATCTATTTGAGAAGAAACCTCTCAGTCTATTCTCTTTGTTGGATGAGGAATCAAATTTCGCTGAGGCTTCTGATTTATCACTTGCCAACAAACTGAAGAATCTCCTGGATGCTAATCATTGCTTCAAAGAGGAAAGAGGCGGAGCTTTCAGTGTTCGTCATTATGCAGGGGAGGTTTTGTATGATACAAATGGGTTTATAGAAAAGAACAGAGATACATTGTCTTCTAATTCCATTCAACTCATTTCATCATGTAATTGTGAACTGCTGAATTTGTTCTCCGAAGTATTTAACCAATCTGAGGAGCATGGAAATACCACTTTCCATTTTGATACATTATACTCACAGAAGAGAGGTGTTGGAACAAACTTCAAGGATCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACTCCTCACTTTATTCGCTGCATAAAACCAAATGCTAAGAAGCTTCCTGGAATTTATGACAATGAACTTGTCCTACAACAGCTCAGATGTTGTGGAGTTCTAGAAGCTGTTAGAATTTCAAGGGCTGGATATCCTACTCGAATGAACCATCAAGAGTTTTCCAGAAGGTACGAGTTTCTGCTTTCTGGGACTGATGTACCTCGGGATCCGTTGAGCATCTCAGTCGCTGTTTTGCAAAATTTTAATATCCCTTTTGAAATGTACCAAGTTGGCTACACAAAATTGTATCTTCGAGCAGGACAGATTGGTGTCCTGGAGGATAAGAGAAAACAGTTTTTGCAGGGAACTCTTCGGATTCAAAAATGCTTCCGTGGTCATCAAGCCTGTAGTTATTTTTGTGAACTTAAGAGTGGAGCGACAATATTACAATCATTTATTCGTGGAGAAATTACAAGAAGGAAACATGGTGTTTTGATGAAATCTTCCATAACCATTTATTCTAAAAAACTTGAGGAGATTCATGCAATCATATTACTTCAATCTGTGATTCGTGGGTGGCTGGTTCGTAGGGATTCTAGTTACAACAATCATGATAATGCAAAACCTAGACTGAAGTCTCATGTCAACATGCCAGAAGTTAAGGATTTGTCCAAAGAGCTGGTTGAGAACATGCCTTCAGCTTTAGCTGAACTCCAGAAACGGGTGTACAGCGCTGAAGCAATTGTCAAGCAAAAGGAAGTGGAAAATACTGAATTGAGGGAAAAGTTAAAACAATCTGAAAGAAAGAGGGTTGAATATGAAGCGAAGATGAAGTCAATGGAGGAGGCATGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCATGCTTCAGAGAATGGCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGCTACTATGATTCTGAACATGCTACTTCCATGGAATCTCGAACAACTGATGGGAGCACACCTATGAAGCTTTCTGGTAGTTTTTCGCTCTCTGATGCAGGGAGGCAGGCTAATGGTACTTTGACTACAGTGAGCAATCTGATGAAGGAATTTGAGCAGCGAAGACAGACCTTTAATGATGAAGTTAAAGCTTTGAATGAGGTTAAACCAGGGCAGTCTGCCAACACTAATTCTGCTGAAGAACTTCGGAAACTTAAGCAAAGATTTGAGGGATGGAAGAAACAATACAAGGTTAGATTACGGGAGACAAAAGCAAGGCTTTCCGAAAACGAAAAAAGTCGATGGACATGGTGGGGGAAATTAAGCTCGAAAGCATAA 3585 0.3933 MVLSASSCSLTRSSLEEMLESLRQMDEEREKKKDLPPALPSRPASKARLPPARRSLPNNFKVGRCVVVENGFIDNVESKRKETSTTSTSTLEYSEYNLRDSSFGRKRVKKDVVESPYVAAISELDDDTISYFIKMKLRVWCRQPRGQWELGSIQSTSGEEASVSLSNGKVLKMFRSELVPANPDILEGADDLIKIAYLNEPSVLHNLRFRYSREMIYSKAGPVLIALNPFKDLQIYGNNHVSSYRQQSVDTPHVYGMVDAAYNQMMRDEVNQSIIISGDSGSGKTETAKIAMQYLAALGSSSCGRANDVLQTNCILEAFGNAKTSVNDNSSRFGKFIQIYFSAMGKICGAKIKTCKLIQAIHFTTDLLSRVVQMVNGERSYHVFYQLCAGSSSSLKERLNLRAAHEYKYLNQSDCMTVGGIDDAKKFHQLKKAFDAVRISKEDQDLIFKMLTAILWLGNISFKVIDSENHIEVMSDEAVTSAAMLMGCSSQELITALSTHKIQPGEDTVAKSLTLLQAIETRDAIAKFIYASLFEWLVQQVNKSLEVGEKHTEKFISILDFYGFQSFQKNNFEQFCINYANERLQQHFNRHLFKLEQEDCESDGIVCTVLDFEDNQECLDLFEKKPLSLFSLLDEESNFAEASDLSLANKLKNLLDANHCFKEERGGAFSVRHYAGEVLYDTNGFIEKNRDTLSSNSIQLISSCNCELLNLFSEVFNQSEEHGNTTFHFDTLYSQKRGVGTNFKDQLFKLMHQLESTTPHFIRCIKPNAKKLPGIYDNELVLQQLRCCGVLEAVRISRAGYPTRMNHQEFSRRYEFLLSGTDVPRDPLSISVAVLQNFNIPFEMYQVGYTKLYLRAGQIGVLEDKRKQFLQGTLRIQKCFRGHQACSYFCELKSGATILQSFIRGEITRRKHGVLMKSSITIYSKKLEEIHAIILLQSVIRGWLVRRDSSYNNHDNAKPRLKSHVNMPEVKDLSKELVENMPSALAELQKRVYSAEAIVKQKEVENTELREKLKQSERKRVEYEAKMKSMEEAWQKQMASLQMSLVAARKSHASENGTVQPVRHDLVSPRYYDSEHATSMESRTTDGSTPMKLSGSFSLSDAGRQANGTLTTVSNLMKEFEQRRQTFNDEVKALNEVKPGQSANTNSAEELRKLKQRFEGWKKQYKVRLRETKARLSENEKSRWTWWGKLSSKA 1194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02319 1194 Gene3D Kinesin motor domain 186 800 IPR036961 -
Trre15g02319 1194 Coils Coil 1144 1182 - -
Trre15g02319 1194 FunFam Myosin heavy chain 379 435 - -
Trre15g02319 1194 Pfam IQ calmodulin-binding motif 895 912 IPR000048 GO:0005515
Trre15g02319 1194 Pfam IQ calmodulin-binding motif 931 947 IPR000048 GO:0005515
Trre15g02319 1194 ProSiteProfiles Myosin motor domain profile. 187 867 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 Gene3D - 801 868 - -
Trre15g02319 1194 Gene3D - 379 435 - -
Trre15g02319 1194 SMART iq_5 868 890 IPR000048 GO:0005515
Trre15g02319 1194 SMART iq_5 928 950 IPR000048 GO:0005515
Trre15g02319 1194 SMART iq_5 891 913 IPR000048 GO:0005515
Trre15g02319 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 916 IPR027417 -
Trre15g02319 1194 CDD MYSc_Myo8 201 855 IPR036022 -
Trre15g02319 1194 PANTHER MYOSIN 180 1179 - -
Trre15g02319 1194 Gene3D Myosin VI head, motor domain, U50 subdomain 436 544 - -
Trre15g02319 1194 PRINTS Myosin heavy chain signature 608 636 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 PRINTS Myosin heavy chain signature 314 341 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 PRINTS Myosin heavy chain signature 555 583 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 PRINTS Myosin heavy chain signature 271 296 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 PRINTS Myosin heavy chain signature 217 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 ProSiteProfiles IQ motif profile. 929 958 IPR000048 GO:0005515
Trre15g02319 1194 Coils Coil 985 1033 - -
Trre15g02319 1194 Gene3D - 871 918 - -
Trre15g02319 1194 Coils Coil 15 35 - -
Trre15g02319 1194 Coils Coil 1117 1137 - -
Trre15g02319 1194 Pfam Myosin head (motor domain) 190 855 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 MobiDBLite consensus disorder prediction 24 55 - -
Trre15g02319 1194 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 134 183 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre15g02319 1194 Gene3D - 567 757 - -
Trre15g02319 1194 ProSiteProfiles IQ motif profile. 892 921 IPR000048 GO:0005515
Trre15g02319 1194 SMART MYSc_2a 181 868 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02319 Trre-Chr15 19172473 19185105 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02319 1 1189 Myosins gene family AT5G54280 55.036 0.0 1330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02319 K10357 - gmx:100802074 1627.07