Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02318 ATGGTTTTATCAGCTTCGTCATGTTCTCTAACGAGAAGCTCGTTGGAAGAGATGTTAGAATCGCTTCGTCAGATGGATGAGGAACGAGAGAAGAAGAAAGACTTACCTCCGGCGTTGCCATCTCGACCGGCGTCTAAGGCGAGGCTTCCTCCGGCGAGACGGTCTTTGCCGAATAATTTTAAGGTTGGTAGATGTGTTGTGGTGGAGAATGGATTTATTGACAATGTGGAAAGTAAGAGGAAAGAGACATCGACAACATCGACATCAACATTAGAATATTCTGAATATAACTTAAGAGATAGCAGTTTTGGAAGGAAGAGAGTAAAGAAGGATGTTGTGGAGTCACCTTATGTGGCAGCAATTTCAGAATTGGATGATGATACTATTTCTTATTTCATCAAAATGAAGCTTCGCGTTTGGTGTAGGCAACCAAGAGGGCAATGGGAGCTAGGTTCAATACAATCAACTTCGGGAGAAGAAGCTTCCGTTTCACTATCTAATGGAAAAGTGCTGAAAATGTTTAGATCAGAACTCGTACCAGCTAATCCTGATATTTTAGAGGGTGCGGATGACCTTATCAAAATCGCTTATTTGAATGAGCCATCTGTTCTTCACAATCTTAGGTTTAGATATTCCCGGGAGATGATTTATAGTAAAGCAGGTCCTGTTTTAATTGCACTCAATCCTTTCAAAGATCTCCAGATCTATGGAAATAATCATGTCTCCAGTTATAGGCAGCAATCTGTTGATACTCCTCATGTTTATGGTATGGTAGATGCAGCTTATAACCAGATGATGAGAGATGAAGTAAATCAGTCTATTATCATAAGTGGTGACAGTGGATCTGGAAAGACAGAGACAGCTAAAATTGCTATGCAATACTTAGCTGCTCTTGGTAGTAGCAGTTGTGGGCGAGCAAATGATGTTCTTCAGACAAATTGTATACTAGAAGCTTTTGGGAATGCAAAAACATCTGTAAATGACAACTCTAGCAGATTTGGAAAGTTTATTCAAATTTATTTCAGTGCCATGGGTAAAATATGCGGGGCTAAAATTAAAACATATTTGTTGGAAAAGTCAAGAGTTGTTCAAATGGTCAATGGTGAGAGGTCGTATCACGTATTTTATCAACTTTGCGCTGGATCTTCATCTAGTCTTAAAGAGAGACTAAATCTTAGAGCAGCCCATGAATATAAATATTTAAATCAAAGTGACTGCATGACAGTTGGTGGTATTGATGATGCTAAAAAATTTCATCAGCTGAAGAAAGCATTTGATGCTGTTCGAATTTCTAAAGAGGACCAAGACCTGATCTTTAAGATGCTTACTGCAATACTATGGCTGGGAAATATATCATTCAAAGTTATTGACAGTGAAAATCACATTGAGGTTATGAGTGATGAAGCTGTAACCAGTGCTGCCATGCTGATGGGTTGCAGTTCCCAGGAATTAATAACAGCATTATCTACCCATAAAATCCAACCTGGCGAGGACACTGTTGCAAAAAGTTTGACATTATTGCAGGCAATTGAAACAAGAGATGCAATTGCCAAATTTATTTATGCAAGCTTGTTTGAATGGCTTGTACAACAAGTTAACAAGTCACTTGAAGTGGGTGAAAAACACACAGAGAAATTCATTAGTATCCTTGATTTTTATGGGTTTCAGTCATTCCAGAAGAACAACTTTGAACAGTTTTGCATAAATTATGCCAATGAGAGGCTTCAACAACATTTTAATCGGCATCTGTTTAAACTTGAGCAGGAGGACTGTGAATCGGACGGCATTGTTTGTACAGTATTAGATTTTGAGGACAATCAAGAGTGCTTGGATCTATTTGAGAAGAAACCTCTCAGTCTATTCTCTTTGTTGGATGAGGAATCAAATTTCGCTGAGGCTTCTGATTTATCACTTGCCAACAAACTGAAGAATCTCCTGGATGCTAATCATTGCTTCAAAGAGGAAAGAGGCGGAGCTTTCAGTGTTCGTCATTATGCAGGGGAGGTTTTGTATGATACAAATGGGTTTATAGAAAAGAACAGAGATACATTGTCTTCTAATTCCATTCAACTCATTTCATCATGTAATTGTGAACTGCTGAATTTGTTCTCCGAAGTATTTAACCAATCTGAGGAGCATGGAAATACCACTTTCCATTTTGATACATTATACTCACAGAAGAGAGGTGTTGGAACAAACTTCAAGGATCAATTGTTCAAGTTGATGCATCAGTTGGAGAGCACCACTCCTCACTTTATTCGCTGCATAAAACCAAATGCTAAGAAGCTTCCTGGAATTTATGACAATGAACTTGTCCTACAACAGCTCAGATGTTGTGGAGTTCTAGAAGCTGTTAGAATTTCAAGGGCTGGATATCCTACTCGAATGAACCATCAAGAGTTTTCCAGAAGGTACGAGTTTCTGCTTTCTGGGACTGATGTACCTCGGGATCCGTTGAGCATCTCAGTCGCTGTTTTGCAAAATTTTAATATCCCTTTTGAAATGTACCAAGTTGGCTACACAAAATTGTATCTTCGAGCAGGACAGATTGGTGTCCTGGAGGATAAGAGAAAACAGTTTTTGCAGGGAACTCTTCGGATTCAAAAATGCTTCCGTGGTCATCAAGCCTGTAGTTATTTTTGTGAACTTAAGAGTGGAGCGACAATATTACAATCATTTATTCGTGGAGAAATTACAAGAAGGAAACATGGTGTTTTGATGAAATCTTCCATAACCATTTATTCTAAAAAACTTGAGGAGATTCATGCAATCATATTACTTCAATCTGTGATTCGTGGGTGGCTGGTTCGTAGGGATTCTAGTTACAACAATCATGATAATGCAAAACCTAGACTGAAGTCTCATGTCAACATGCCAGAAGTTAAGGATTTGTCCAAAGAGCTGGTTGAGAACATGCCTTCAGCTTTAGCTGAACTCCAGAAACGGGTGTACAGCGCTGAAGCAATTGTCAAGCAAAAGGAAGTGGAAAATACTGAATTGAGGGAAAAGTTAAAACAATCTGAAAGAAAGAGGGTTGAATATGAAGCGAAGATGAAGTCAATGGAGGAGGCATGGCAAAAGCAGATGGCATCTTTGCAAATGAGTCTTGTTGCTGCTAGAAAGAGCCATGCTTCAGAGAATGGCACTGTTCAACCTGTAAGACATGATCTTGTGTCACCTCGCTACTATGATTCTGAACATGCTACTTCCATGGAATCTCGAACAACTGATGGGAGCACACCTATGAAGCTTTCTGGTAGTTTTTCGCTCTCTGATGCAGGGAGGCAGGCTAATGGTACTTTGACTACAGTGAGCAATCTGATGAAGGAATTTGAGCAGCGAAGACAGACCTTTAATGATGAAGTTAAAGCTTTGAATGAGGTTAAACCAGGGCAGTCTGCCAACACTAATTCTGCTGAAGAACTTCGGAAACTTAAGCAAAGATTTGAGGGATGGAAGAAACAATACAAGGTTAGATTACGGGAGACAAAAGCAAGGCTTTCCGAAAACGAAAAAAGTCGATGGACATGGTGGGGGAAATTAAGCTCGAAAGCATAA 3558 0.394 MVLSASSCSLTRSSLEEMLESLRQMDEEREKKKDLPPALPSRPASKARLPPARRSLPNNFKVGRCVVVENGFIDNVESKRKETSTTSTSTLEYSEYNLRDSSFGRKRVKKDVVESPYVAAISELDDDTISYFIKMKLRVWCRQPRGQWELGSIQSTSGEEASVSLSNGKVLKMFRSELVPANPDILEGADDLIKIAYLNEPSVLHNLRFRYSREMIYSKAGPVLIALNPFKDLQIYGNNHVSSYRQQSVDTPHVYGMVDAAYNQMMRDEVNQSIIISGDSGSGKTETAKIAMQYLAALGSSSCGRANDVLQTNCILEAFGNAKTSVNDNSSRFGKFIQIYFSAMGKICGAKIKTYLLEKSRVVQMVNGERSYHVFYQLCAGSSSSLKERLNLRAAHEYKYLNQSDCMTVGGIDDAKKFHQLKKAFDAVRISKEDQDLIFKMLTAILWLGNISFKVIDSENHIEVMSDEAVTSAAMLMGCSSQELITALSTHKIQPGEDTVAKSLTLLQAIETRDAIAKFIYASLFEWLVQQVNKSLEVGEKHTEKFISILDFYGFQSFQKNNFEQFCINYANERLQQHFNRHLFKLEQEDCESDGIVCTVLDFEDNQECLDLFEKKPLSLFSLLDEESNFAEASDLSLANKLKNLLDANHCFKEERGGAFSVRHYAGEVLYDTNGFIEKNRDTLSSNSIQLISSCNCELLNLFSEVFNQSEEHGNTTFHFDTLYSQKRGVGTNFKDQLFKLMHQLESTTPHFIRCIKPNAKKLPGIYDNELVLQQLRCCGVLEAVRISRAGYPTRMNHQEFSRRYEFLLSGTDVPRDPLSISVAVLQNFNIPFEMYQVGYTKLYLRAGQIGVLEDKRKQFLQGTLRIQKCFRGHQACSYFCELKSGATILQSFIRGEITRRKHGVLMKSSITIYSKKLEEIHAIILLQSVIRGWLVRRDSSYNNHDNAKPRLKSHVNMPEVKDLSKELVENMPSALAELQKRVYSAEAIVKQKEVENTELREKLKQSERKRVEYEAKMKSMEEAWQKQMASLQMSLVAARKSHASENGTVQPVRHDLVSPRYYDSEHATSMESRTTDGSTPMKLSGSFSLSDAGRQANGTLTTVSNLMKEFEQRRQTFNDEVKALNEVKPGQSANTNSAEELRKLKQRFEGWKKQYKVRLRETKARLSENEKSRWTWWGKLSSKA 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02318 1185 PRINTS Myosin heavy chain signature 599 627 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 PRINTS Myosin heavy chain signature 546 574 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 PRINTS Myosin heavy chain signature 271 296 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 PRINTS Myosin heavy chain signature 314 341 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 PRINTS Myosin heavy chain signature 217 236 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 SMART iq_5 919 941 IPR000048 GO:0005515
Trre15g02318 1185 SMART iq_5 859 881 IPR000048 GO:0005515
Trre15g02318 1185 SMART iq_5 882 904 IPR000048 GO:0005515
Trre15g02318 1185 ProSiteProfiles IQ motif profile. 883 912 IPR000048 GO:0005515
Trre15g02318 1185 Gene3D Kinesin motor domain 186 791 IPR036961 -
Trre15g02318 1185 Coils Coil 1135 1173 - -
Trre15g02318 1185 PANTHER MYOSIN 180 1170 - -
Trre15g02318 1185 Pfam IQ calmodulin-binding motif 886 903 IPR000048 GO:0005515
Trre15g02318 1185 Pfam IQ calmodulin-binding motif 922 938 IPR000048 GO:0005515
Trre15g02318 1185 ProSiteProfiles Myosin motor domain profile. 187 858 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 Coils Coil 976 1024 - -
Trre15g02318 1185 ProSiteProfiles IQ motif profile. 920 949 IPR000048 GO:0005515
Trre15g02318 1185 FunFam Myosin heavy chain 370 426 - -
Trre15g02318 1185 Coils Coil 15 35 - -
Trre15g02318 1185 Gene3D - 558 748 - -
Trre15g02318 1185 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 907 IPR027417 -
Trre15g02318 1185 MobiDBLite consensus disorder prediction 24 55 - -
Trre15g02318 1185 CDD MYSc_Myo8 201 846 IPR036022 -
Trre15g02318 1185 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 134 183 IPR004009 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 SMART MYSc_2a 181 859 IPR001609 GO:0003774|GO:0005524|GO:0016459
Trre15g02318 1185 Gene3D Myosin VI head, motor domain, U50 subdomain 427 535 - -
Trre15g02318 1185 Gene3D - 862 909 - -
Trre15g02318 1185 Coils Coil 1108 1128 - -
Trre15g02318 1185 Gene3D - 370 426 - -
Trre15g02318 1185 Gene3D - 792 859 - -
Trre15g02318 1185 Pfam Myosin head (motor domain) 190 846 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02318 Trre-Chr15 19172473 19185105 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02318 1 1180 Myosins gene family AT5G54280 55.682 0.0 1347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02318 K10357 - gmx:100802074 1641.71