Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02316 ATGGCTACCACCACCACCACAACAACAACAGAACAATACACCTCACGTGCTTCACACATGCACGACACCACCACAGACGATGATGACGACACAATTAACGGAAGTGAACCGGAGAATAATCACACCGATGACGACAACGAAGACGAAGAAGAAGAAGAGCAGCAACATGTAAACTACAGAAGATCAATAACTTCTTCAAGTTTTAGTCGAATTGTAGACCCAAGAGCAAAATGGGTGCAAGAATGGAACAGAGTTTTCTTGTTAGTATGTGCAGCAGGGTTGTTTGTGGATCCACTTTTCTTCTATGCTCTTAACATCAGTGACTCATTTATGTGTCTTTTCATCGACGGTTGGTTCGCCGTTACCGTTACGGTTCTCCGTTGTATGACTGATGCTTTGCACCTTTGGAATATGTTTCTCCGTTTTAAGACGGTGAAACGTAGCTCATTAACATTCGCCACCAGTTCATCCACCGCCGATGCTGGCCGTTCCGTCGCTCTTAGTTATCTTAAGTCCCGCCGTGGCTTCTTCTTTGACCTCTTCGTTATTCTTCCTATACCTCAGATTGTGCTTTGGGTGGGAATTCCTTCCTTGTTGGAGCAAGGTTCAATTACATTGGTGATGACAATATTATTAATTGTATTTCTCTTCCAGTACCTTCCCAAAATTTATCACTCTGTATGCCATCTACGACGCACACAAAACCTCTCCGGTTACATTTTTGGAACTGTTTGGTGGGGAATTGCCCTTAACATGATCGCGTATTTTGTCGCTTCTCACGCTGCGGGGGCATGTTGGTATTTGTTGGGGATCCAAAGAGCAGCCAAATGTCTGAAAGAACAATGTCTGAAAACAAATGGTTGTGGCAATCAAATATTGTCTTGTCATAACCCAATATATTATGGAAGTACAAGTTTGTTGAATAAGGATATAGCAAGATTAGCATGGGCAAAGAACAGGGAAGCAAGGTCTACATGCTTAAATGGTCCTGATAAGTTCAATTATGGTGCTTATAGATGGACTGTTCAGCTTGTCACTAATGATAATCGACTAGAAAAAGTACTTTTCCCTATTTTTTGGGGATTAATGACTCTCAGCACTTTTGGGAACCTAGAGAGCACAACAGATTGGCTTGAAGTAGTTTTCAACATCATAGTCTTGACGAGTGGGCTTCTTCTTGTGACTATGTTGATTGGAAACATCAAGGTGTTTTTGCATGCAACAACATCAAAGAAACAAGTGATGCAATTGAAAATGAGGAATGTTGAATGGTGGATGAGGAAAAAACATTTGCCGCAGGGGTTTCGACAACGTGTGAGAAACTATGAAAGACAACGTTGGGCAGCTATGCGCGGGGTTGATGAATGTGAGATGACCAAAAATCTTCCTGAAGGTTTAAGAAGAGACATTAAATACCATCTTTGTCTAGATTTGGTCAGACAGGTGCCATTGTTTCAGCATATGGATGAGCTGGTTCTAGAGAACATATGTGACCGAGTGAAATCTCTTATATTCACCAAGGGAGAAACAATAGCTAGAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTAGTAAGGGGTCACCTTCAAAGTAGCCAAGTTCTAAGAGATGGGTTGAAAAGTTGTTGCATGTTAGGACCAGGAAACTTCACTGGGGATGAACTCCTTTCATGGTGTTTAAGGAGACCCTTTATTGAGCGACTTCCACTTTCAACATCAACACTTGTCACACTTGAAACAACAGAGGCTTTTGGTCTTGAAGCAGAGGATGTCAAGTATGTCACACAACATTTCAGGTACACATTTGTGAAGGAAAAAGTGAAGAGAAGTGCTAGGTATTACTCACCAGGGTGGAGAACTTGGGGTGCTGTGGCAATTCAATTGGCATGGAGAAGATACAGGCATAGGTTGACTTTGAACTCATTGTCATTTATAAGACCTAGGAGGCCCTTATCAAGATGTTCTTCATTGGGAGAAGATAGGCTTCGAATCTACACTGCTTTGTTAACTTCACCAAAGCCTAATCAAGATGATTTTGACTTTTGA 2046 0.4169 MATTTTTTTTEQYTSRASHMHDTTTDDDDDTINGSEPENNHTDDDNEDEEEEEQQHVNYRRSITSSSFSRIVDPRAKWVQEWNRVFLLVCAAGLFVDPLFFYALNISDSFMCLFIDGWFAVTVTVLRCMTDALHLWNMFLRFKTVKRSSLTFATSSSTADAGRSVALSYLKSRRGFFFDLFVILPIPQIVLWVGIPSLLEQGSITLVMTILLIVFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRAAKCLKEQCLKTNGCGNQILSCHNPIYYGSTSLLNKDIARLAWAKNREARSTCLNGPDKFNYGAYRWTVQLVTNDNRLEKVLFPIFWGLMTLSTFGNLESTTDWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQVMQLKMRNVEWWMRKKHLPQGFRQRVRNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGLKSCCMLGPGNFTGDELLSWCLRRPFIERLPLSTSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWGAVAIQLAWRRYRHRLTLNSLSFIRPRRPLSRCSSLGEDRLRIYTALLTSPKPNQDDFDF 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02316 681 MobiDBLite consensus disorder prediction 1 59 - -
Trre15g02316 681 FunFam cyclic nucleotide-gated ion channel 4 482 600 - -
Trre15g02316 681 Gene3D Helix hairpin bin 409 475 - -
Trre15g02316 681 MobiDBLite consensus disorder prediction 20 40 - -
Trre15g02316 681 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 641 - -
Trre15g02316 681 Pfam Ion transport protein 82 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre15g02316 681 MobiDBLite consensus disorder prediction 1 19 - -
Trre15g02316 681 Pfam Cyclic nucleotide-binding domain 505 592 IPR000595 -
Trre15g02316 681 SUPERFAMILY cAMP-binding domain-like 410 598 IPR018490 -
Trre15g02316 681 FunFam Cyclic nucleotide-gated ion channel 1 411 475 - -
Trre15g02316 681 ProSiteProfiles cAMP/cGMP binding motif profile. 484 563 IPR000595 -
Trre15g02316 681 Gene3D Jelly Rolls 482 600 IPR014710 -
Trre15g02316 681 SUPERFAMILY Voltage-gated potassium channels 74 405 - -
Trre15g02316 681 CDD CAP_ED 484 590 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02316 Trre-Chr15 19151091 19161160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02316 68 680 Ion Channels AT5G54250 77.383 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02316 K05391 - gmx:100796761 1100.89