LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre15g02301	ATGAAGCTTGGATGGAACTTATTAACTGGTTTAAACACGTTTCAATCGTCTTGGAAAAGTTTAGATGATCCAGCTAAAGGAGATCATTCTGTAAATATTGATATCAGAGGATTTCCTCAACTAGTTATGAAGACGGGGTCTGTCATAAGATATAGAATGGGATCATGGAATGGACGCGCTTTTACCGGATATCCATCTCAACCGTTGAAACTAAAGCAAAGATTTGAATTTGTCATGACTGAAAAAGAAGTGTATCATCGGCATGAAGTTGTTGATAGTTCTATTGTTTCTATATATAAACTCTCCGCTTCAGGACAATGTCAGGCTTTTGTTTGGATAAGTGAAACAAGTGATAGGATAGTCATCAACATTGGCATGGAAGATTCTTGTGATAACTATGCAACATGTGGTGCTAATTCTGTTTGCAATATGAACGGAAATGTTCCGAGATGTGAATGCCTAAAAGGTTATGTTCCTAAGTTTCCTGAACAATGGAATATTTCATATTGGTCTAGTGGTTGTGTTCCGAAAATTAAGTCAGTTTGTGGAAACAATAACACAAGTGGTTTCTTGAAATACCGAGAAATGAAATTGCCAGACACGTCTTCATCATGGTACAATAAAACCATGAACCTTGTGGAATGCCAAAAAGTGTGTATGAAAAATTGTTCGTGTACGGCTTATACAAATGTGGATATCCGAAATGGAGGAAGTGGTTGTTTGCTTTGGTTTGGTGATCTAGTTGACATGAGAGTATTCCTTCAATGGGGACAAGATCTTTATATCAAAGTCCCTTCTTCAGAATTGGATCATGTTAGTGTTCATGGCAACGGAAACGAGAAGAAGCGATTGATACGGATCCCAGTTGCCGTGATAATTTCTGGATTCCTAATATGTGCCTGCATAATAATATTTATAAAGCGAGTGGCACCGAGATTATATCATCTTGCGCCATTTCAATGGAGGCAACAATATTTTAAATTGAAGAAGGAAGATTCTGATCTGCCAATATTTGATTTTTCAATCATTGTTAAGGCAACTGATAGTTTTGCTATCAGAAATAAACTTGGGGAAGGTGGATTTGGACCTGTTTATAAGGGTACCCTTATAGATGGAAAAGAGGTAGCCATAAAGCGCAACTCAAAGATGTCTGATCAAGGGTTGGACGAATTTAAAAACGAAATTTTGTTGATTACAAAACTTCAGCACCGTAATCTTGTGAAGCTTATTGGTTGTTCTATTCATAGAGAGGAAAAATTGTTGATCTATGAATACATGCCTAACAGGAGCTTAGACTACTTCATCTTTGATGAAACTAGAAGCAAACTCTTGGACTGGTCGAAGCGTTCCCATATTATTGCTGGCATAGCTAGAGGAATTCTTTATCTCCACCAAGATTCTAGACTTAGAATTATTCACAGAGATTTAAAGTTAAGCAATATCTTGCTAGATGCCGATATGAATCCAAAAATCTCAGATTTTGGTCTGGCTCGGACATGTTGTGGCGATCAAGTTGAAGCCAGAACATGCAAATTGGTTGGAACATATGGCTACATGCCTCCTGAGTATGCTATGCATGGCCGTTACTCCGGAAAATCAGATGTGTTTAGTTTTGGAGTAATAGTATTGGAGATAATTAGCGGAAACAAGGTGAAGGTGTTTTATGACTCTGAAAACTCACTCAACCTTCTTGGACATGCATGGAGACTCTGGATTGAAAACATGCCACTGGAACTAGTTGATCCACAATTAATTGAGACAAGCCTTTATTCTGAAATTTTAAGATATATGCATGTGGGATTGTTGTGTGTACAAGAAAAACCAGAAGATAGACCAGACATGTCATCTGTAATTCTAATGCTGAATGGTGAGAAATTATTGTCTCAGCCGAATGCTCCGGGATTTTATACTGGAAGGGGCTTACCTGAACCAATATTGCTATCTTCAAATAAGATGTCAATTACAATTTTAGAGGGAAGATAG	1983	0.3752	MKLGWNLLTGLNTFQSSWKSLDDPAKGDHSVNIDIRGFPQLVMKTGSVIRYRMGSWNGRAFTGYPSQPLKLKQRFEFVMTEKEVYHRHEVVDSSIVSIYKLSASGQCQAFVWISETSDRIVINIGMEDSCDNYATCGANSVCNMNGNVPRCECLKGYVPKFPEQWNISYWSSGCVPKIKSVCGNNNTSGFLKYREMKLPDTSSSWYNKTMNLVECQKVCMKNCSCTAYTNVDIRNGGSGCLLWFGDLVDMRVFLQWGQDLYIKVPSSELDHVSVHGNGNEKKRLIRIPVAVIISGFLICACIIIFIKRVAPRLYHLAPFQWRQQYFKLKKEDSDLPIFDFSIIVKATDSFAIRNKLGEGGFGPVYKGTLIDGKEVAIKRNSKMSDQGLDEFKNEILLITKLQHRNLVKLIGCSIHREEKLLIYEYMPNRSLDYFIFDETRSKLLDWSKRSHIIAGIARGILYLHQDSRLRIIHRDLKLSNILLDADMNPKISDFGLARTCCGDQVEARTCKLVGTYGYMPPEYAMHGRYSGKSDVFSFGVIVLEIISGNKVKVFYDSENSLNLLGHAWRLWIENMPLELVDPQLIETSLYSEILRYMHVGLLCVQEKPEDRPDMSSVILMLNGEKLLSQPNAPGFYTGRGLPEPILLSSNKMSITILEGR	660

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre15g02301	660	SMART	ntp_6	185	264	IPR003609	-
	Trre15g02301	660	Gene3D	Hepatocyte Growth Factor	182	260	-	-
	Trre15g02301	660	ProSiteProfiles	Protein kinase domain profile.	350	627	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g02301	660	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	316	425	-	-
	Trre15g02301	660	Gene3D	Phosphorylase Kinase; domain 1	317	425	-	-
	Trre15g02301	660	ProSiteProfiles	PAN/Apple domain profile.	182	265	IPR003609	-
	Trre15g02301	660	CDD	STKc_IRAK	356	623	-	-
	Trre15g02301	660	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	426	629	-	-
	Trre15g02301	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	471	483	IPR008271	GO:0004672\|GO:0006468
	Trre15g02301	660	FunFam	G-type lectin S-receptor-like serine/threonine-protein kinase	181	264	-	-
	Trre15g02301	660	Pfam	PAN-like domain	182	250	IPR003609	-
	Trre15g02301	660	Gene3D	Transferase(Phosphotransferase) domain 1	426	630	-	-
	Trre15g02301	660	Pfam	Protein tyrosine and serine/threonine kinase	352	618	IPR001245	GO:0004672\|GO:0006468
	Trre15g02301	660	SMART	serkin_6	350	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre15g02301	660	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	43	636	-	-
	Trre15g02301	660	Pfam	S-locus glycoprotein domain	51	161	IPR000858	GO:0048544
	Trre15g02301	660	SUPERFAMILY	Protein kinase-like (PK-like)	333	621	IPR011009	-
	Trre15g02301	660	CDD	PAN_AP_plant	182	265	-	-
	Trre15g02301	660	ProSiteProfiles	EGF-like domain profile.	126	163	IPR000742	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre15g02301	Trre-Chr15	18999487	19002251	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre15g02301	338	635	Receptor kinase-like Gene Family	AT4G23230	57.860	4.82e-120	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Trre15g02301		PK_Tyr_Ser-Thr	2.8e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre15g02301	-		-	aprc:113865090	937.562