Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02297 ATGATTTATATGATCATAGAGTTTATTATTTTGTTTATTTTTTCTTCCTACATGTTAAAATGCACTTCACTGGACAGTTTATTTCAGAATCAATCTATCCTTGATGGCCAGAGTTTGATTTCACCAAAAGGAACTTTTGAATTAGGTTTCTTCACTCCAGGAAATTCAAAAGGAAGATATTTAGGTATGTGGTACAAAAACTTAACCCCTTTAACAATTGTATGGGTGGCCAACAGAGAAACACCACTGCACAATAATTTGGGAGTTTTTAAACTCAATCAAAATGGGGTACTTGCGATTCTCAATAGCACAAACAACACCATCTGGTCCTCGAATGCGTCAAACAAACCCGCGAATAATTTTATAACTGCACAGCTATTGGACACAGGAAATCTTGTGTTGAAAATTGGGCAGGACAATGTTTTGTGGCAGAGTTTTGATTATCCAAGTGATACATTATTGCCGGGAATGAAACTTGGGTGGAACTTATTAACCGGTCTAAACATGTTTGAATCGTCTTGGAAAAGTTTAGATGATCCAGCTAAGGGAAATTATTCTGTAAATATTGATATCAGAGGATTTCCACAACTAGTTATAATGAAGGGATCTGTCATACAATTGAGAGTAGGATCATGGAATGGACGCACTTTTACCGGATATCCAACACAACCATTGAAACAAAAGCAAAGATTTGAATTTGTCATGACTGAAAAAGAAGTGTATCATCGGTATGAAGTTGTTGATAGTTCTGTTGTTTCTATATATAAACTCTCTCCTTTAGGAAATTTGCAGGCTTTAGTTTGGACAAGTGAAACAAGCGATAGGATAGTTGTCAACACTGGCATGGAAGATTCTTGTGACAGCTATGCAACATGTGGAGCAAATTCTGTATGCAATATGAACGAAAACGTTCCGAGATGTGAATGCCTAAAAGGTTATGTTCCTAAGTTTCCTGAACAATGGAATATTTCATATTGGTTTAGTGGTTGTGTTCCGAAAATTAAGTCAGTTTGTGGAAACAATAACACTAGTGGTTTCTTGAAATACCGAGAAATGAAATTGCCAGACACGTCTTCATCATGGTACAATGAAACCATGAACCTTGTGGAATGCCAAAATCTGTGTATGAAAAATTGTTCATGTACGGCTTATACAAATGTGGATATCCGAAATGGAGGAAGTGGTTGTTTGCTTTGGTTTAGTGATCTGGTTGACATGAGAGTATTTTCTCAACGGGGACAAGATCTTTATGTCAGAGTCCCTTCTTCAGAATTGGATCATGTTAGTGTTAATGGCAACGGAAACCAGAAGAAGCAACTGATACGGATCACAGTTGCGGTGATAATTTCTGGATTCTTAATATGTGCCTGCATAATAATATTTATAAAGCGAGTGGCACCGAGATTATATCATCTTGCGCCATTTCAATGGAGGCAACAATATTTTAAATTGAAGAAGGAAGATTCTGATCTGCCGATATTTGATTTTTCAATCATTGTTAAGGCAACTGATAGTTTTGCTATCAGCAATAAACTTGGGGAAGGTGGATTTGGACCTGTTTATAAGGGTACCCTTATAGATGGAAAAGAGGTAGCCATAAAGCGCAACTCAAAGATGTCTGATCAAGGGTCGGAGGAATTTAAAAACGAAGTTTTGTTGATTGCAAAACTTCAGCACCGTAATCTTGTGAAGCTTCTTGGTTGTTGTATTCATAGAGAGGAAAAATTGTTGATCTACGAATACATGCCCAACAGGAGCTTAGACTACTTCATCTTTGATGAAACTAGAAGAAAACTCTTGGCCTGGTCGAAGCGTTCCCAAATTATTGCTGGCATTGCTAGAGGACTTCTTTATCTCCACCAAGATTCTAGACTTAGAATTATTCACAGAGATTTAAAGTTAAGCAATATCTTGCTAGATGCCCATATGAATCCAAAAATATCAGATTTTGGTCTGGCTCGGACATTTTGTGGCGATCAAGTTGAAGCCAGAACAAGAAGATTGGTTGGAACATATGGCTACATGCCTCCAGAGTATGCTATGCATGGCCGATACTCCATGAAATCAGATGTGTTTAGTTTTGGAGTAATAGTTTTGGAGATAATTAGCGGAAAAAAGGTGAAGGTGTTTTATGACTCAGAACACTCACTCAACCTTCTTGGACATGCATGGAGACTGTGGATTGCAAACATGCCACTGGAACTAGTTGATCCACCCTTAATTGAGACAATCCTTTATTCTGAAATATTAAGATATATGCATGTGGGATTGTTGTGTGTACAAGAAAAACCAGGAGATAGACCAGACATGTCATCTGTAATTCTTATGCTGAATGGTGAGAAATTATTGTCTCAGCCGAAAGCTCCGGGATTTTATACTGGAATGGGCTTACCAGAACCAATATCGCCATCTTCAAATCAGATGTCAATTACAACTTTTGAGGCAAGATAG 2451 0.3754 MIYMIIEFIILFIFSSYMLKCTSLDSLFQNQSILDGQSLISPKGTFELGFFTPGNSKGRYLGMWYKNLTPLTIVWVANRETPLHNNLGVFKLNQNGVLAILNSTNNTIWSSNASNKPANNFITAQLLDTGNLVLKIGQDNVLWQSFDYPSDTLLPGMKLGWNLLTGLNMFESSWKSLDDPAKGNYSVNIDIRGFPQLVIMKGSVIQLRVGSWNGRTFTGYPTQPLKQKQRFEFVMTEKEVYHRYEVVDSSVVSIYKLSPLGNLQALVWTSETSDRIVVNTGMEDSCDSYATCGANSVCNMNENVPRCECLKGYVPKFPEQWNISYWFSGCVPKIKSVCGNNNTSGFLKYREMKLPDTSSSWYNETMNLVECQNLCMKNCSCTAYTNVDIRNGGSGCLLWFSDLVDMRVFSQRGQDLYVRVPSSELDHVSVNGNGNQKKQLIRITVAVIISGFLICACIIIFIKRVAPRLYHLAPFQWRQQYFKLKKEDSDLPIFDFSIIVKATDSFAISNKLGEGGFGPVYKGTLIDGKEVAIKRNSKMSDQGSEEFKNEVLLIAKLQHRNLVKLLGCCIHREEKLLIYEYMPNRSLDYFIFDETRRKLLAWSKRSQIIAGIARGLLYLHQDSRLRIIHRDLKLSNILLDAHMNPKISDFGLARTFCGDQVEARTRRLVGTYGYMPPEYAMHGRYSMKSDVFSFGVIVLEIISGKKVKVFYDSEHSLNLLGHAWRLWIANMPLELVDPPLIETILYSEILRYMHVGLLCVQEKPGDRPDMSSVILMLNGEKLLSQPKAPGFYTGMGLPEPISPSSNQMSITTFEAR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02297 816 Pfam PAN-like domain 338 406 IPR003609 -
Trre15g02297 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 19 146 - -
Trre15g02297 816 ProSiteProfiles Protein kinase domain profile. 506 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02297 816 Gene3D Hepatocyte Growth Factor 338 418 - -
Trre15g02297 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 337 420 - -
Trre15g02297 816 SMART ntp_6 341 420 IPR003609 -
Trre15g02297 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 582 785 - -
Trre15g02297 816 ProSiteProfiles Bulb-type lectin domain profile. 24 147 IPR001480 -
Trre15g02297 816 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 11 767 - -
Trre15g02297 816 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Trre15g02297 816 CDD B_lectin 30 149 IPR001480 -
Trre15g02297 816 Pfam S-locus glycoprotein domain 208 317 IPR000858 GO:0048544
Trre15g02297 816 Pfam Protein tyrosine and serine/threonine kinase 508 714 IPR001245 GO:0004672|GO:0006468
Trre15g02297 816 Gene3D Transferase(Phosphotransferase) domain 1 582 787 - -
Trre15g02297 816 SUPERFAMILY Protein kinase-like (PK-like) 488 785 IPR011009 -
Trre15g02297 816 SMART serkin_6 506 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02297 816 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 472 581 - -
Trre15g02297 816 CDD STKc_IRAK 512 779 - -
Trre15g02297 816 Gene3D - 20 146 IPR036426 -
Trre15g02297 816 ProSiteProfiles EGF-like domain profile. 282 319 IPR000742 -
Trre15g02297 816 Pfam D-mannose binding lectin 72 175 IPR001480 -
Trre15g02297 816 Gene3D Phosphorylase Kinase; domain 1 480 581 - -
Trre15g02297 816 CDD PAN_AP_plant 338 421 - -
Trre15g02297 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Trre15g02297 816 PIRSF SRK 1 815 IPR024171 GO:0004674
Trre15g02297 816 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 180 IPR036426 -
Trre15g02297 816 SMART blect_4 30 149 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02297 Trre-Chr15 18979152 18982533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02297 494 816 Receptor kinase-like Gene Family AT4G11530 57.567 7.77e-123 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g02297 PK_Tyr_Ser-Thr 2.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02297 - - aprc:113865090 1134.78