Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre15g02288 ATGTATTGCAATATCAATGGATATTTTAACCTTTCCTTGTTGATCATTGTTTCATGTTTACTTATACCTTCCCTCAAATTTTCCATAGCAGCAGATACTATTAAACTCTCCCAGTCCTTCACTGTTGGCATGACCTTGGTTTCCCAACGTGATAAGTTTGTACTTGGTTTCTTCACTCCTGAAAACTCCAACAAAAGTTACTTAGGAATTTGGTACAAGAATATCCCAATTCAAACAATTGTTTGGGTTGCAAATGGTGCCAAACCCATCAATGATTCCTCATCTGGTATCCTAATACTAGACAACACTGGCAACCTTGTCCTCAAACAACATGACAAAGTAGTTTGGTATACAACATCTCAACAAGATTCCCGGAATCCAGTTGCACAACTTCTGGATTCAGGGAATCTTGTGATAAGAGACGAGAAGGAAACAAACTCAGAAGCCTATTTGTGGCAGAGTTTTGATTACCCTAGTGATACAATACTTCCAGGGATGAAGTTGGGTTGGAATCTTAGAACTCATACGGAAACGAGAATGACATCTTGGAAAAGTCCGGACGATCCATCACCTGGAAACTTTTATTGGGGTTCATTGCTTTATAATTATCCTGAACAATATTTGATGCAAGGAACAAAGAAATTTATAAGAGTTGGACCGTGGAATGGATTGCATTTTAGTGGTATACCAGGTCAAAAGCCAAACCACATTTATGTTTACAACCATGTGTCTAATAAGGATGAGATGTATACTATTTATGCTTTGGTGAACGATTCTGTCATTTCAAGAATGGTAATGAATCAAACCACTTTGATCTATACGCGATACGTGTGGATGGAAGATCAATTTTTTTGGAAAGTTCTTAAAACACTACCTAAAGACTCGTGTGACTTTTATGGAACCTGTGGAGCTAATGGTATTTGCATGATCACAAGTTCACAGATGTGTGATTGTTTATCAGGTTTTAGCCCCAAGTCTCCAGCTGCTTGGAACTCAATTGATTGGACTCAAGGATGTGTCCGAAATAAACCGTTAAACTGTACGAAGAAACTCAAGGATGGATTTGTGAAAGTGACAGGTCTAAAAGTGCCAGATTGTACACATACTTGGGTAGATCAAACCATAACTCTTCATGAATGTAGAGTCAAGTGCTTGAATAATTGTTCTTGTATGGCTTATACTAATACAAACATATCAGGAGAAGGCAGTGGCTGTGTCATATGGTTTGGTGATTTAATTGATATTAGGAAATTTGATGATGATGGACAGGATCTTTATATTAGAATGGATGCTTCAGAATTTGGCAAGGAGGGACATGATGGGCTCAAGAATGATCTGATAAGAATAATTCCTAGCACCATTATAGTTTTTGGGATACTTTGTCTTGGATATCGCCGCTACATATTGCGGAGGAGAAGAATAACTGAGGATTCGGAAGTTATCGATATGGAAGGTGACAAAGGTAGTGAGGACGAGGATGATCTCGATCTCCCATTGCTTGCGTATTCAACCTTAGTCACTGCCACTAATAACTTCTCGATAAAGAACAAGATTGGAGAAGGTGGTTTCGGACCTGTATACAAGGGAAGATTGGTATGTGGACAAGAAATTGCTGTGAAGAGGCTTTCAAGCGACTCTGGACAAGGAATTACTGAGTTAAAGAATGAAGTAAAGCTTATAGCAAAAGTTCAACACAGGAATCTTGTTAAACTTATTGGATGTTGCATCGAAGAAGAAGAAAGAATGCTAGTTTATGAATACATGAAAAACCGTAGCTTGAATCGGTTTATTTTTGATGATACTAAAAGAAAACTTCTAGATTGGCCTAAGCGCTTCAACATTATTAGCGGAATTGCTCGAGGTCTTCTTTATCTTCATCATGATTCTAGATTAAGGATAATTCATAGAGACCTCAAACCAAGCAATATTTTGCTTGATGACAGGCTGAACCCAAAAATATCAGATTTTGGTATAGCTAGAATTTTCGGATTAGATCAAACACATGGAAATACCAAGCGAGTTGTCGGAACATATGGCTACATGGCACCAGAATATGCTGTTGATGGACTTTTTTCTGTGAAATCTGACGTGTTTAGCCTTGGAATTTTGATGCTGGAGATTATATGTGGGAAGAGAAATAGAGGTTTTTATGTCGAAAATGAATCTCCTAACCTTGTCACCCATGCATGGAGTTTATGGAAAGAGGGAAGGGCTTTAGAACTAATTGACAAAAACATAGAGGATTCTTGTGTTGAATCAGAGGTATTGCGTTGCATTCATATCAGTCTATTGTGTGTCCAGCAAATGCCAGAGGATAGGCCAGCTATGCCTTCAGTTGTTCTAATGTTGGGGAGTGACAGTGAAGAATTTTCTAAGCCAAAACAGCCTGGTTACTATGTAAAGAAGGATTCATTTGCAGAATGTTCCAACTTAGGTCGAAGTGAAAAGATCATGACTAACGATATGACCATCACCTTATTAGAAGCCCGATGA 2493 0.3823 MYCNINGYFNLSLLIIVSCLLIPSLKFSIAADTIKLSQSFTVGMTLVSQRDKFVLGFFTPENSNKSYLGIWYKNIPIQTIVWVANGAKPINDSSSGILILDNTGNLVLKQHDKVVWYTTSQQDSRNPVAQLLDSGNLVIRDEKETNSEAYLWQSFDYPSDTILPGMKLGWNLRTHTETRMTSWKSPDDPSPGNFYWGSLLYNYPEQYLMQGTKKFIRVGPWNGLHFSGIPGQKPNHIYVYNHVSNKDEMYTIYALVNDSVISRMVMNQTTLIYTRYVWMEDQFFWKVLKTLPKDSCDFYGTCGANGICMITSSQMCDCLSGFSPKSPAAWNSIDWTQGCVRNKPLNCTKKLKDGFVKVTGLKVPDCTHTWVDQTITLHECRVKCLNNCSCMAYTNTNISGEGSGCVIWFGDLIDIRKFDDDGQDLYIRMDASEFGKEGHDGLKNDLIRIIPSTIIVFGILCLGYRRYILRRRRITEDSEVIDMEGDKGSEDEDDLDLPLLAYSTLVTATNNFSIKNKIGEGGFGPVYKGRLVCGQEIAVKRLSSDSGQGITELKNEVKLIAKVQHRNLVKLIGCCIEEEERMLVYEYMKNRSLNRFIFDDTKRKLLDWPKRFNIISGIARGLLYLHHDSRLRIIHRDLKPSNILLDDRLNPKISDFGIARIFGLDQTHGNTKRVVGTYGYMAPEYAVDGLFSVKSDVFSLGILMLEIICGKRNRGFYVENESPNLVTHAWSLWKEGRALELIDKNIEDSCVESEVLRCIHISLLCVQQMPEDRPAMPSVVLMLGSDSEEFSKPKQPGYYVKKDSFAECSNLGRSEKIMTNDMTITLLEAR 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre15g02288 830 SMART ntp_6 350 429 IPR003609 -
Trre15g02288 830 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 189 IPR036426 -
Trre15g02288 830 Gene3D - 27 155 IPR036426 -
Trre15g02288 830 ProSiteProfiles Protein kinase domain profile. 512 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02288 830 SMART serkin_6 512 783 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02288 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 476 587 - -
Trre15g02288 830 CDD STKc_IRAK 518 783 - -
Trre15g02288 830 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 19 774 - -
Trre15g02288 830 Pfam Protein kinase domain 513 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre15g02288 830 ProSitePatterns Serine/Threonine protein kinases active-site signature. 633 645 IPR008271 GO:0004672|GO:0006468
Trre15g02288 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 155 - -
Trre15g02288 830 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Trre15g02288 830 ProSiteProfiles PAN/Apple domain profile. 347 430 IPR003609 -
Trre15g02288 830 Gene3D Transferase(Phosphotransferase) domain 1 588 801 - -
Trre15g02288 830 PIRSF SRK 4 830 IPR024171 GO:0004674
Trre15g02288 830 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 588 791 - -
Trre15g02288 830 CDD B_lectin 37 158 IPR001480 -
Trre15g02288 830 SMART blect_4 37 158 IPR001480 -
Trre15g02288 830 CDD PAN_AP_plant 344 428 - -
Trre15g02288 830 Pfam D-mannose binding lectin 79 184 IPR001480 -
Trre15g02288 830 SUPERFAMILY Protein kinase-like (PK-like) 497 783 IPR011009 -
Trre15g02288 830 Pfam PAN-like domain 347 415 IPR003609 -
Trre15g02288 830 ProSiteProfiles EGF-like domain profile. 292 328 IPR000742 -
Trre15g02288 830 ProSiteProfiles Bulb-type lectin domain profile. 31 152 IPR001480 -
Trre15g02288 830 Gene3D Phosphorylase Kinase; domain 1 485 587 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre15g02288 Trre-Chr15 18902445 18905672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre15g02288 444 801 Receptor kinase-like Gene Family AT4G23230 54.190 3.51e-127 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre15g02288 Pkinase 5.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre15g02288 - - gmx:100775648 1199.88